miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23684 5' -54.5 NC_005261.1 + 136549 0.71 0.740356
Target:  5'- --cUCGGCCaGCUGGUgGggGCAGAAGg -3'
miRNA:   3'- cccAGUCGG-CGGCCAgCuaCGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 59345 0.66 0.948529
Target:  5'- cGGGUC-GCCGCC-GUCGccaCGAGGGu -3'
miRNA:   3'- -CCCAGuCGGCGGcCAGCuacGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 98780 0.69 0.806459
Target:  5'- -cGcCGGCCGCCGGcCGcgcGUGCGAAAc -3'
miRNA:   3'- ccCaGUCGGCGGCCaGC---UACGUUUUc -5'
23684 5' -54.5 NC_005261.1 + 70865 0.69 0.806459
Target:  5'- aGGG-CGGCCGCCGuGgcguggccggCGGUGCAc--- -3'
miRNA:   3'- -CCCaGUCGGCGGC-Ca---------GCUACGUuuuc -5'
23684 5' -54.5 NC_005261.1 + 15430 0.69 0.806459
Target:  5'- -aGUCGGCCgggcgcggGCCGG-CGAUGgAGAAGa -3'
miRNA:   3'- ccCAGUCGG--------CGGCCaGCUACgUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 134369 0.7 0.797429
Target:  5'- cGGGgggCGgcGCCGCUGG-CGAcgGCGAGAGc -3'
miRNA:   3'- -CCCa--GU--CGGCGGCCaGCUa-CGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 109342 0.7 0.797429
Target:  5'- gGGGUCGGCgGCCGcGUCGccGUc---- -3'
miRNA:   3'- -CCCAGUCGgCGGC-CAGCuaCGuuuuc -5'
23684 5' -54.5 NC_005261.1 + 66713 0.7 0.797429
Target:  5'- --cUCAGCgagCGCCGGUUGAUGCGc--- -3'
miRNA:   3'- cccAGUCG---GCGGCCAGCUACGUuuuc -5'
23684 5' -54.5 NC_005261.1 + 98915 0.7 0.769457
Target:  5'- cGGGUCGGCgG--GGUCGGcUGCGGGGGg -3'
miRNA:   3'- -CCCAGUCGgCggCCAGCU-ACGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 112031 0.7 0.769457
Target:  5'- ---aCAGCCGCCacguGGaCGAUGCGGGAGc -3'
miRNA:   3'- cccaGUCGGCGG----CCaGCUACGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 58287 0.71 0.740356
Target:  5'- gGGGcCGGCgCGCCGGggggCGcgGgGAGGGg -3'
miRNA:   3'- -CCCaGUCG-GCGGCCa---GCuaCgUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 19808 1.1 0.003072
Target:  5'- gGGGUCAGCCGCCGGUCGAUGCAAAAGu -3'
miRNA:   3'- -CCCAGUCGGCGGCCAGCUACGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 100266 0.71 0.740356
Target:  5'- -aGUCGGCgCGCCGGUggcgcaCGAagcgGCAGAAGg -3'
miRNA:   3'- ccCAGUCG-GCGGCCA------GCUa---CGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 36668 0.71 0.73045
Target:  5'- aGGGUCGaaCGCUGGggCGGUGCuGAAGu -3'
miRNA:   3'- -CCCAGUcgGCGGCCa-GCUACGuUUUC- -5'
23684 5' -54.5 NC_005261.1 + 49242 0.71 0.720456
Target:  5'- aGGUCGGCCGCCGccgcggcggcGUCGgcGCGc--- -3'
miRNA:   3'- cCCAGUCGGCGGC----------CAGCuaCGUuuuc -5'
23684 5' -54.5 NC_005261.1 + 82261 0.72 0.685954
Target:  5'- aGGGUCuucuccagcucccGCCGCUGGUCgcgGAUGCAGcgcccGAGg -3'
miRNA:   3'- -CCCAGu------------CGGCGGCCAG---CUACGUU-----UUC- -5'
23684 5' -54.5 NC_005261.1 + 81323 0.72 0.66642
Target:  5'- gGGGUCgucgccgucgucggGGCCGUCGG-CGggGCGGGGGc -3'
miRNA:   3'- -CCCAG--------------UCGGCGGCCaGCuaCGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 96961 0.74 0.576545
Target:  5'- cGGGgCAGCCGCCGGgcgCGAUucacGCGGc-- -3'
miRNA:   3'- -CCCaGUCGGCGGCCa--GCUA----CGUUuuc -5'
23684 5' -54.5 NC_005261.1 + 16397 0.74 0.576545
Target:  5'- -cGUCGucGUCGCCGGgCGGUGCGGGAGa -3'
miRNA:   3'- ccCAGU--CGGCGGCCaGCUACGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 19112 0.76 0.448921
Target:  5'- cGGGUCAGCCgGUCGGUgGGgcuagGCGGGAa -3'
miRNA:   3'- -CCCAGUCGG-CGGCCAgCUa----CGUUUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.