miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23684 5' -54.5 NC_005261.1 + 114992 0.68 0.886555
Target:  5'- cGGGcCGGCCGCCGcGgcccCGGccccGCGGAGGc -3'
miRNA:   3'- -CCCaGUCGGCGGC-Ca---GCUa---CGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 68761 0.68 0.886555
Target:  5'- cGGGgcgCcgcggAGCCGCCGuGUCGAacuucgUGCAGGu- -3'
miRNA:   3'- -CCCa--G-----UCGGCGGC-CAGCU------ACGUUUuc -5'
23684 5' -54.5 NC_005261.1 + 39979 0.68 0.879488
Target:  5'- cGGGUUGcgcgcGCCGCCGG-CG-UGCGuGAAGg -3'
miRNA:   3'- -CCCAGU-----CGGCGGCCaGCuACGU-UUUC- -5'
23684 5' -54.5 NC_005261.1 + 103454 0.68 0.872194
Target:  5'- cGGUCGGCCGCCGcgcccGUCGccaggGCGu--- -3'
miRNA:   3'- cCCAGUCGGCGGC-----CAGCua---CGUuuuc -5'
23684 5' -54.5 NC_005261.1 + 134203 0.68 0.872194
Target:  5'- cGGcUCGGCgCGCgGGUCGcgGCGGccGg -3'
miRNA:   3'- cCC-AGUCG-GCGgCCAGCuaCGUUuuC- -5'
23684 5' -54.5 NC_005261.1 + 71060 0.68 0.864681
Target:  5'- uGGGcCAGCCGCCG--CGcgGCGGGc- -3'
miRNA:   3'- -CCCaGUCGGCGGCcaGCuaCGUUUuc -5'
23684 5' -54.5 NC_005261.1 + 54843 0.68 0.864681
Target:  5'- aGGGcUAGCUGCCGG-CGccGCAGGc- -3'
miRNA:   3'- -CCCaGUCGGCGGCCaGCuaCGUUUuc -5'
23684 5' -54.5 NC_005261.1 + 74296 0.69 0.840878
Target:  5'- cGGUC-GCCGCCGGgcagcaGAcGCGAGAc -3'
miRNA:   3'- cCCAGuCGGCGGCCag----CUaCGUUUUc -5'
23684 5' -54.5 NC_005261.1 + 23361 0.69 0.830009
Target:  5'- -uGUCGGCCgugacaaacgccgaGCCGGUggCGAUGCAgcaGAAGa -3'
miRNA:   3'- ccCAGUCGG--------------CGGCCA--GCUACGU---UUUC- -5'
23684 5' -54.5 NC_005261.1 + 92799 0.69 0.824026
Target:  5'- gGGGUcCGGUCGCCGGgcgCGcggGCGugGGa -3'
miRNA:   3'- -CCCA-GUCGGCGGCCa--GCua-CGUuuUC- -5'
23684 5' -54.5 NC_005261.1 + 50024 0.69 0.815328
Target:  5'- cGGGcgccCAGCCGCCGcGcgaCGGUGCAGc-- -3'
miRNA:   3'- -CCCa---GUCGGCGGC-Ca--GCUACGUUuuc -5'
23684 5' -54.5 NC_005261.1 + 43182 0.69 0.806459
Target:  5'- cGG-C-GCCGCCGG-CGAgGCAGAGGu -3'
miRNA:   3'- cCCaGuCGGCGGCCaGCUaCGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 98780 0.69 0.806459
Target:  5'- -cGcCGGCCGCCGGcCGcgcGUGCGAAAc -3'
miRNA:   3'- ccCaGUCGGCGGCCaGC---UACGUUUUc -5'
23684 5' -54.5 NC_005261.1 + 70865 0.69 0.806459
Target:  5'- aGGG-CGGCCGCCGuGgcguggccggCGGUGCAc--- -3'
miRNA:   3'- -CCCaGUCGGCGGC-Ca---------GCUACGUuuuc -5'
23684 5' -54.5 NC_005261.1 + 15430 0.69 0.806459
Target:  5'- -aGUCGGCCgggcgcggGCCGG-CGAUGgAGAAGa -3'
miRNA:   3'- ccCAGUCGG--------CGGCCaGCUACgUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 134369 0.7 0.797429
Target:  5'- cGGGgggCGgcGCCGCUGG-CGAcgGCGAGAGc -3'
miRNA:   3'- -CCCa--GU--CGGCGGCCaGCUa-CGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 109342 0.7 0.797429
Target:  5'- gGGGUCGGCgGCCGcGUCGccGUc---- -3'
miRNA:   3'- -CCCAGUCGgCGGC-CAGCuaCGuuuuc -5'
23684 5' -54.5 NC_005261.1 + 66713 0.7 0.797429
Target:  5'- --cUCAGCgagCGCCGGUUGAUGCGc--- -3'
miRNA:   3'- cccAGUCG---GCGGCCAGCUACGUuuuc -5'
23684 5' -54.5 NC_005261.1 + 98915 0.7 0.769457
Target:  5'- cGGGUCGGCgG--GGUCGGcUGCGGGGGg -3'
miRNA:   3'- -CCCAGUCGgCggCCAGCU-ACGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 112031 0.7 0.769457
Target:  5'- ---aCAGCCGCCacguGGaCGAUGCGGGAGc -3'
miRNA:   3'- cccaGUCGGCGG----CCaGCUACGUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.