miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23684 5' -54.5 NC_005261.1 + 62744 0.67 0.918367
Target:  5'- uGGagGGCgGCCaGGUCGcUGUggGAGa -3'
miRNA:   3'- cCCagUCGgCGG-CCAGCuACGuuUUC- -5'
23684 5' -54.5 NC_005261.1 + 66713 0.7 0.797429
Target:  5'- --cUCAGCgagCGCCGGUUGAUGCGc--- -3'
miRNA:   3'- cccAGUCG---GCGGCCAGCUACGUuuuc -5'
23684 5' -54.5 NC_005261.1 + 68761 0.68 0.886555
Target:  5'- cGGGgcgCcgcggAGCCGCCGuGUCGAacuucgUGCAGGu- -3'
miRNA:   3'- -CCCa--G-----UCGGCGGC-CAGCU------ACGUUUuc -5'
23684 5' -54.5 NC_005261.1 + 70865 0.69 0.806459
Target:  5'- aGGG-CGGCCGCCGuGgcguggccggCGGUGCAc--- -3'
miRNA:   3'- -CCCaGUCGGCGGC-Ca---------GCUACGUuuuc -5'
23684 5' -54.5 NC_005261.1 + 71060 0.68 0.864681
Target:  5'- uGGGcCAGCCGCCG--CGcgGCGGGc- -3'
miRNA:   3'- -CCCaGUCGGCGGCcaGCuaCGUUUuc -5'
23684 5' -54.5 NC_005261.1 + 72224 0.66 0.948529
Target:  5'- uGGuGUCccGCCgGCCGG-CGGUGCGcgcAAAGu -3'
miRNA:   3'- -CC-CAGu-CGG-CGGCCaGCUACGU---UUUC- -5'
23684 5' -54.5 NC_005261.1 + 74296 0.69 0.840878
Target:  5'- cGGUC-GCCGCCGGgcagcaGAcGCGAGAc -3'
miRNA:   3'- cCCAGuCGGCGGCCag----CUaCGUUUUc -5'
23684 5' -54.5 NC_005261.1 + 81323 0.72 0.66642
Target:  5'- gGGGUCgucgccgucgucggGGCCGUCGG-CGggGCGGGGGc -3'
miRNA:   3'- -CCCAG--------------UCGGCGGCCaGCuaCGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 82058 0.66 0.934545
Target:  5'- cGGGcCAcGUCGCCGgGUCGAcgGCGu--- -3'
miRNA:   3'- -CCCaGU-CGGCGGC-CAGCUa-CGUuuuc -5'
23684 5' -54.5 NC_005261.1 + 82261 0.72 0.685954
Target:  5'- aGGGUCuucuccagcucccGCCGCUGGUCgcgGAUGCAGcgcccGAGg -3'
miRNA:   3'- -CCCAGu------------CGGCGGCCAG---CUACGUU-----UUC- -5'
23684 5' -54.5 NC_005261.1 + 83884 0.66 0.947228
Target:  5'- cGGGUCagcucugagcgcggGGCCGCCGGgcUCGGgacCGAcGGg -3'
miRNA:   3'- -CCCAG--------------UCGGCGGCC--AGCUac-GUUuUC- -5'
23684 5' -54.5 NC_005261.1 + 92799 0.69 0.824026
Target:  5'- gGGGUcCGGUCGCCGGgcgCGcggGCGugGGa -3'
miRNA:   3'- -CCCA-GUCGGCGGCCa--GCua-CGUuuUC- -5'
23684 5' -54.5 NC_005261.1 + 94089 0.66 0.934545
Target:  5'- cGGGaacGCCGCCG-UCcGUGCGGAAGc -3'
miRNA:   3'- -CCCaguCGGCGGCcAGcUACGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 96622 0.67 0.918367
Target:  5'- uGGcgcgCAGCCGCCGGgCGAUcuucucGCAGGc- -3'
miRNA:   3'- cCCa---GUCGGCGGCCaGCUA------CGUUUuc -5'
23684 5' -54.5 NC_005261.1 + 96961 0.74 0.576545
Target:  5'- cGGGgCAGCCGCCGGgcgCGAUucacGCGGc-- -3'
miRNA:   3'- -CCCaGUCGGCGGCCa--GCUA----CGUUuuc -5'
23684 5' -54.5 NC_005261.1 + 97687 0.66 0.924004
Target:  5'- uGGGcggGGCUGCCGGggCGGUGgGGAGa -3'
miRNA:   3'- -CCCag-UCGGCGGCCa-GCUACgUUUUc -5'
23684 5' -54.5 NC_005261.1 + 98172 0.67 0.912485
Target:  5'- cGGGUguguccuuggAGCCGCCGGgggCGcgGCGGGc- -3'
miRNA:   3'- -CCCAg---------UCGGCGGCCa--GCuaCGUUUuc -5'
23684 5' -54.5 NC_005261.1 + 98780 0.69 0.806459
Target:  5'- -cGcCGGCCGCCGGcCGcgcGUGCGAAAc -3'
miRNA:   3'- ccCaGUCGGCGGCCaGC---UACGUUUUc -5'
23684 5' -54.5 NC_005261.1 + 98807 0.66 0.948529
Target:  5'- cGGGUC-GCCGgCGG-CG-UGcCGGAAGa -3'
miRNA:   3'- -CCCAGuCGGCgGCCaGCuAC-GUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 98915 0.7 0.769457
Target:  5'- cGGGUCGGCgG--GGUCGGcUGCGGGGGg -3'
miRNA:   3'- -CCCAGUCGgCggCCAGCU-ACGUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.