miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23685 3' -55.3 NC_005261.1 + 12753 0.66 0.935027
Target:  5'- -gGC-CCGGCGaggUCGUAgGCGGCGGu -3'
miRNA:   3'- caUGcGGUCGCag-AGCAUgCGCUGCU- -5'
23685 3' -55.3 NC_005261.1 + 119402 0.66 0.935027
Target:  5'- --gUGCCGGCaccCUCG-GCGCGACGc -3'
miRNA:   3'- cauGCGGUCGca-GAGCaUGCGCUGCu -5'
23685 3' -55.3 NC_005261.1 + 99006 0.66 0.935027
Target:  5'- ----uUCAGCGUCgcgagCGgcgGCGCGGCGGc -3'
miRNA:   3'- caugcGGUCGCAGa----GCa--UGCGCUGCU- -5'
23685 3' -55.3 NC_005261.1 + 108747 0.66 0.935027
Target:  5'- -gGCGCCgcGGCGUC-CGcgGCGCGcCGc -3'
miRNA:   3'- caUGCGG--UCGCAGaGCa-UGCGCuGCu -5'
23685 3' -55.3 NC_005261.1 + 58216 0.66 0.935027
Target:  5'- -cGCGCCAGCagcgCGccCGCGGCGGc -3'
miRNA:   3'- caUGCGGUCGcagaGCauGCGCUGCU- -5'
23685 3' -55.3 NC_005261.1 + 102339 0.66 0.935027
Target:  5'- -cGCGCCAGC---UCGgcCGCGuCGAa -3'
miRNA:   3'- caUGCGGUCGcagAGCauGCGCuGCU- -5'
23685 3' -55.3 NC_005261.1 + 115758 0.66 0.935027
Target:  5'- cGU-CGUCGGCcccGUCUCGgcgGCGuCGACGu -3'
miRNA:   3'- -CAuGCGGUCG---CAGAGCa--UGC-GCUGCu -5'
23685 3' -55.3 NC_005261.1 + 110507 0.66 0.934531
Target:  5'- ---gGCCAGCGUCacggccgUCGUcuGCGgGGCGc -3'
miRNA:   3'- caugCGGUCGCAG-------AGCA--UGCgCUGCu -5'
23685 3' -55.3 NC_005261.1 + 100729 0.66 0.929951
Target:  5'- -cGCGCC-GCG-CgCGcGCGCGGCGGc -3'
miRNA:   3'- caUGCGGuCGCaGaGCaUGCGCUGCU- -5'
23685 3' -55.3 NC_005261.1 + 39544 0.66 0.929951
Target:  5'- cGgcCGCCAGCccCgcgCGcGCGCGGCGGu -3'
miRNA:   3'- -CauGCGGUCGcaGa--GCaUGCGCUGCU- -5'
23685 3' -55.3 NC_005261.1 + 100504 0.66 0.929951
Target:  5'- cGUGcCGUCGGCGUCcagGUagccGCGCGGCGc -3'
miRNA:   3'- -CAU-GCGGUCGCAGag-CA----UGCGCUGCu -5'
23685 3' -55.3 NC_005261.1 + 32392 0.66 0.929951
Target:  5'- -cGCGgCGGCGUCccggagcgCGUGCcgccgccgGCGACGGg -3'
miRNA:   3'- caUGCgGUCGCAGa-------GCAUG--------CGCUGCU- -5'
23685 3' -55.3 NC_005261.1 + 3643 0.66 0.929951
Target:  5'- gGUGCGCCGcuagcGCGUCUgGaGCGCaGGCc- -3'
miRNA:   3'- -CAUGCGGU-----CGCAGAgCaUGCG-CUGcu -5'
23685 3' -55.3 NC_005261.1 + 135115 0.66 0.929951
Target:  5'- -gGCGgacCCcGCGUCUCcgcaGCGCGGCGGg -3'
miRNA:   3'- caUGC---GGuCGCAGAGca--UGCGCUGCU- -5'
23685 3' -55.3 NC_005261.1 + 74859 0.66 0.924635
Target:  5'- -cGCGCCgGGCGgaggaggCGgACGCGGCGGc -3'
miRNA:   3'- caUGCGG-UCGCaga----GCaUGCGCUGCU- -5'
23685 3' -55.3 NC_005261.1 + 82161 0.66 0.924635
Target:  5'- -cGCGCCAGCaagcgCggcgCGgaagGCGCGGCGu -3'
miRNA:   3'- caUGCGGUCGca---Ga---GCa---UGCGCUGCu -5'
23685 3' -55.3 NC_005261.1 + 5984 0.66 0.924635
Target:  5'- --cUGCCGcGCGUCUCcgcuccuccCGCGGCGAg -3'
miRNA:   3'- cauGCGGU-CGCAGAGcau------GCGCUGCU- -5'
23685 3' -55.3 NC_005261.1 + 52845 0.66 0.924635
Target:  5'- --uCGCCGGUGUCcC--ACGUGGCGAg -3'
miRNA:   3'- cauGCGGUCGCAGaGcaUGCGCUGCU- -5'
23685 3' -55.3 NC_005261.1 + 93695 0.66 0.921329
Target:  5'- -gGCGCCGGCGggugccucuuccucCUCGUcguCGuCGGCGGc -3'
miRNA:   3'- caUGCGGUCGCa-------------GAGCAu--GC-GCUGCU- -5'
23685 3' -55.3 NC_005261.1 + 59985 0.66 0.919078
Target:  5'- -gGCGCCGuccGCaccCUCGggcaGCGCGACGGg -3'
miRNA:   3'- caUGCGGU---CGca-GAGCa---UGCGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.