miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23685 5' -57.5 NC_005261.1 + 20835 0.66 0.845692
Target:  5'- -aCUGCGCGUUCGcgGgGGCAG-CGUGg -3'
miRNA:   3'- gaGGUGUGCAGGCa-CgCCGUCaGCAU- -5'
23685 5' -57.5 NC_005261.1 + 54146 0.66 0.829313
Target:  5'- -gCCGCACGcggCCGUGCGcGgGGUUGc- -3'
miRNA:   3'- gaGGUGUGCa--GGCACGC-CgUCAGCau -5'
23685 5' -57.5 NC_005261.1 + 74273 0.66 0.803429
Target:  5'- --gCGCGCGUCCGcgGCgggcggGGCGGUCGc- -3'
miRNA:   3'- gagGUGUGCAGGCa-CG------CCGUCAGCau -5'
23685 5' -57.5 NC_005261.1 + 73785 0.67 0.794481
Target:  5'- -cCUGCgACGUgCGcGCGGCGGUCGg- -3'
miRNA:   3'- gaGGUG-UGCAgGCaCGCCGUCAGCau -5'
23685 5' -57.5 NC_005261.1 + 29989 0.67 0.794481
Target:  5'- -cCgGCGCGUCCGgcaGCGGCGcGUCu-- -3'
miRNA:   3'- gaGgUGUGCAGGCa--CGCCGU-CAGcau -5'
23685 5' -57.5 NC_005261.1 + 75467 0.67 0.794481
Target:  5'- uUCCAgGCG-CCGgGCGGCGGcgCGg- -3'
miRNA:   3'- gAGGUgUGCaGGCaCGCCGUCa-GCau -5'
23685 5' -57.5 NC_005261.1 + 111664 0.67 0.785387
Target:  5'- cCUCC-CGCG-CCGcgGUGGCGG-CGUAc -3'
miRNA:   3'- -GAGGuGUGCaGGCa-CGCCGUCaGCAU- -5'
23685 5' -57.5 NC_005261.1 + 94096 0.67 0.776156
Target:  5'- -gCCGC-CGUCCGUGCGGaAGcacaCGUGg -3'
miRNA:   3'- gaGGUGuGCAGGCACGCCgUCa---GCAU- -5'
23685 5' -57.5 NC_005261.1 + 54480 0.67 0.766798
Target:  5'- aUCCGgGCGUCgG-GCGGCAGgCGc- -3'
miRNA:   3'- gAGGUgUGCAGgCaCGCCGUCaGCau -5'
23685 5' -57.5 NC_005261.1 + 31337 0.67 0.75732
Target:  5'- -gCCAgCGCG-CCGcUGCGGCGGcgCGUGg -3'
miRNA:   3'- gaGGU-GUGCaGGC-ACGCCGUCa-GCAU- -5'
23685 5' -57.5 NC_005261.1 + 81302 0.69 0.678303
Target:  5'- --gCGCACGUCCGUGCcGUuGUCGg- -3'
miRNA:   3'- gagGUGUGCAGGCACGcCGuCAGCau -5'
23685 5' -57.5 NC_005261.1 + 102667 0.69 0.63658
Target:  5'- cCUCCGCggcgcccagcgccGCGUCCGccGCGGCcGUCGc- -3'
miRNA:   3'- -GAGGUG-------------UGCAGGCa-CGCCGuCAGCau -5'
23685 5' -57.5 NC_005261.1 + 114636 0.71 0.526705
Target:  5'- gUCaCGCGCG-CCGcGCGGCAGUCa-- -3'
miRNA:   3'- gAG-GUGUGCaGGCaCGCCGUCAGcau -5'
23685 5' -57.5 NC_005261.1 + 86970 0.74 0.381139
Target:  5'- --gCACACGUCCG-GCGGCAGcacggcgcccUCGUGg -3'
miRNA:   3'- gagGUGUGCAGGCaCGCCGUC----------AGCAU- -5'
23685 5' -57.5 NC_005261.1 + 19309 1.07 0.002675
Target:  5'- gCUCCACACGUCCGUGCGGCAGUCGUAg -3'
miRNA:   3'- -GAGGUGUGCAGGCACGCCGUCAGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.