miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23686 3' -55.4 NC_005261.1 + 28241 0.66 0.91793
Target:  5'- gGCG-CGcGCGAuAGCGGGGGcUGcUCGGGg -3'
miRNA:   3'- -UGCaGC-CGCU-UCGUCUCUaGC-AGCCC- -5'
23686 3' -55.4 NC_005261.1 + 25288 0.66 0.91793
Target:  5'- gGCG-CGGUcuguGGCcguGAGcGUCGUCGGGg -3'
miRNA:   3'- -UGCaGCCGcu--UCGu--CUC-UAGCAGCCC- -5'
23686 3' -55.4 NC_005261.1 + 40267 0.66 0.916215
Target:  5'- gGCGgccgCGGCGggGCucAGuAGAcgauguggacguucUCGUCGcGGa -3'
miRNA:   3'- -UGCa---GCCGCuuCG--UC-UCU--------------AGCAGC-CC- -5'
23686 3' -55.4 NC_005261.1 + 21673 0.66 0.912131
Target:  5'- uACGUgcucCGGCuGggGCucGAGcgCGUCGcGGg -3'
miRNA:   3'- -UGCA----GCCG-CuuCGu-CUCuaGCAGC-CC- -5'
23686 3' -55.4 NC_005261.1 + 56160 0.66 0.912131
Target:  5'- gGCGgcagCGGCGggGCccgcGGGGAggacgacgCG-CGGGc -3'
miRNA:   3'- -UGCa---GCCGCuuCG----UCUCUa-------GCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 25396 0.67 0.906098
Target:  5'- -gGUCGGgGGAGgAGAGggUGagGGGc -3'
miRNA:   3'- ugCAGCCgCUUCgUCUCuaGCagCCC- -5'
23686 3' -55.4 NC_005261.1 + 74881 0.67 0.906098
Target:  5'- cGCGgCGGCGGcGGCGGAG-UCGgCGGc -3'
miRNA:   3'- -UGCaGCCGCU-UCGUCUCuAGCaGCCc -5'
23686 3' -55.4 NC_005261.1 + 127640 0.67 0.899832
Target:  5'- gACGgCGGCGgcGcCGGGGggCGcgCGGGu -3'
miRNA:   3'- -UGCaGCCGCuuC-GUCUCuaGCa-GCCC- -5'
23686 3' -55.4 NC_005261.1 + 45339 0.67 0.899832
Target:  5'- uGCGUCGuGCaGAuguuccuggagGGCugcagcgaGGAGcgCGUCGGGg -3'
miRNA:   3'- -UGCAGC-CG-CU-----------UCG--------UCUCuaGCAGCCC- -5'
23686 3' -55.4 NC_005261.1 + 70158 0.67 0.899832
Target:  5'- cCGUUGGgGAacAGCAGcAGggCG-CGGGa -3'
miRNA:   3'- uGCAGCCgCU--UCGUC-UCuaGCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 128122 0.67 0.899832
Target:  5'- -gGUCGGgcCGAGuGCGGAGAgaggcgacggUCGcCGGGg -3'
miRNA:   3'- ugCAGCC--GCUU-CGUCUCU----------AGCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 98014 0.67 0.899832
Target:  5'- gGCGcuggCGGCGAGGCuGGAGA-CGcCGcGGu -3'
miRNA:   3'- -UGCa---GCCGCUUCG-UCUCUaGCaGC-CC- -5'
23686 3' -55.4 NC_005261.1 + 90162 0.67 0.899832
Target:  5'- gAUGaCGGgGAGGCGGAGGggGgggaCGGGg -3'
miRNA:   3'- -UGCaGCCgCUUCGUCUCUagCa---GCCC- -5'
23686 3' -55.4 NC_005261.1 + 47340 0.67 0.893336
Target:  5'- cGCGUCGGCGAcgacGCAGucGAagcCGaCGGGc -3'
miRNA:   3'- -UGCAGCCGCUu---CGUCu-CUa--GCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 56112 0.67 0.892674
Target:  5'- cGCGagCGGCGGgagcgcgccgcagGGCGGGGggCG-CGGGc -3'
miRNA:   3'- -UGCa-GCCGCU-------------UCGUCUCuaGCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 90228 0.67 0.886614
Target:  5'- cGCG-CGGCG-GGCGGGcgcgcCGUCGGGu -3'
miRNA:   3'- -UGCaGCCGCuUCGUCUcua--GCAGCCC- -5'
23686 3' -55.4 NC_005261.1 + 103867 0.67 0.886614
Target:  5'- gGCGgCGGCGggGCGGcgc-CGcCGGGc -3'
miRNA:   3'- -UGCaGCCGCuuCGUCucuaGCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 69745 0.67 0.886614
Target:  5'- gGCGgaggaggaGGCGAGcGCGGGGGgcggCGcCGGGg -3'
miRNA:   3'- -UGCag------CCGCUU-CGUCUCUa---GCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 48343 0.67 0.886614
Target:  5'- cGCG-CGGCGAGGCcGAGGagcCGgcuccacuUCGGGa -3'
miRNA:   3'- -UGCaGCCGCUUCGuCUCUa--GC--------AGCCC- -5'
23686 3' -55.4 NC_005261.1 + 24143 0.67 0.886614
Target:  5'- -gGUgGGCGggGCucaccuggcGGGAUCGUCGcaGGc -3'
miRNA:   3'- ugCAgCCGCuuCGu--------CUCUAGCAGC--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.