miRNA display CGI


Results 21 - 40 of 569 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23686 5' -58.4 NC_005261.1 + 72440 0.78 0.205843
Target:  5'- uGCCCCc-GGCGGgGGCgCCCGCGgcGAGCg -3'
miRNA:   3'- -CGGGGuuUUGUCgCCG-GGGCGU--CUCG- -5'
23686 5' -58.4 NC_005261.1 + 62301 0.78 0.205843
Target:  5'- cGCCgCgCGGGcgcGCGGCGGCCCCGCGGucccccAGCg -3'
miRNA:   3'- -CGG-G-GUUU---UGUCGCCGGGGCGUC------UCG- -5'
23686 5' -58.4 NC_005261.1 + 27421 0.77 0.219883
Target:  5'- aGCCCCGAcggccgcgcauAuuacaaugaguuugGCGGCGggccGCCCCGCGGGGCg -3'
miRNA:   3'- -CGGGGUU-----------U--------------UGUCGC----CGGGGCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 218 0.77 0.221492
Target:  5'- cGCCCCugguGCucGCgGGCCCCGC-GAGCg -3'
miRNA:   3'- -CGGGGuuu-UGu-CG-CCGGGGCGuCUCG- -5'
23686 5' -58.4 NC_005261.1 + 97531 0.77 0.221492
Target:  5'- cGCCgCGAu-CGGCGGCCCCgGCGGuGCc -3'
miRNA:   3'- -CGGgGUUuuGUCGCCGGGG-CGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 137901 0.77 0.221492
Target:  5'- cGCCCCugguGCucGCgGGCCCCGC-GAGCg -3'
miRNA:   3'- -CGGGGuuu-UGu-CG-CCGGGGCGuCUCG- -5'
23686 5' -58.4 NC_005261.1 + 11631 0.77 0.221492
Target:  5'- cGCCCCcacGCGGCGcccccucgaGCCCCGCcGGAGCc -3'
miRNA:   3'- -CGGGGuuuUGUCGC---------CGGGGCG-UCUCG- -5'
23686 5' -58.4 NC_005261.1 + 35686 0.77 0.221492
Target:  5'- cCCCCGc--CGGCGaGCCCCGguGGGCc -3'
miRNA:   3'- cGGGGUuuuGUCGC-CGGGGCguCUCG- -5'
23686 5' -58.4 NC_005261.1 + 119525 0.77 0.23192
Target:  5'- gGCCCCGGuccccGCGGCcgagcaaGGCCCCGCcgcGGGGCc -3'
miRNA:   3'- -CGGGGUUu----UGUCG-------CCGGGGCG---UCUCG- -5'
23686 5' -58.4 NC_005261.1 + 93662 0.77 0.23248
Target:  5'- cGCCCaccgguccgcGGGCGGCGGCgCCgGCGGGGCg -3'
miRNA:   3'- -CGGGgu--------UUUGUCGCCG-GGgCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 114998 0.77 0.23248
Target:  5'- gGCCgCCGcgGCccCGGCCCCGCGGAGg -3'
miRNA:   3'- -CGG-GGUuuUGucGCCGGGGCGUCUCg -5'
23686 5' -58.4 NC_005261.1 + 98322 0.77 0.23248
Target:  5'- cGCCgCCAGcGGCGGCGcGCCCCGUgucgacgcgGGGGCg -3'
miRNA:   3'- -CGG-GGUU-UUGUCGC-CGGGGCG---------UCUCG- -5'
23686 5' -58.4 NC_005261.1 + 107646 0.77 0.238144
Target:  5'- cGCCCgCGcugcgcgcgcAAACuccGCGGCCCCGCcGGGCg -3'
miRNA:   3'- -CGGG-GU----------UUUGu--CGCCGGGGCGuCUCG- -5'
23686 5' -58.4 NC_005261.1 + 31275 0.77 0.24334
Target:  5'- aCCCCGAGGCGcuggccgagaucGCGGCCCgccgccgCGCGGGGCc -3'
miRNA:   3'- cGGGGUUUUGU------------CGCCGGG-------GCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 23152 0.77 0.243923
Target:  5'- gGCCCCAAAG-AGUgGGCCCgGCAGGcGCg -3'
miRNA:   3'- -CGGGGUUUUgUCG-CCGGGgCGUCU-CG- -5'
23686 5' -58.4 NC_005261.1 + 122968 0.77 0.243923
Target:  5'- gGCCCCAcacacAGGCucGGUGGCCuCCuGCAGGGCc -3'
miRNA:   3'- -CGGGGU-----UUUG--UCGCCGG-GG-CGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 135003 0.77 0.243923
Target:  5'- cGCCCCuggcGCGGCGGgCCCGCAcgcGGCc -3'
miRNA:   3'- -CGGGGuuu-UGUCGCCgGGGCGUc--UCG- -5'
23686 5' -58.4 NC_005261.1 + 15669 0.76 0.249818
Target:  5'- uGCUCCAGGAagauCAGCcuGCCCCGCAGcGCg -3'
miRNA:   3'- -CGGGGUUUU----GUCGc-CGGGGCGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 105094 0.76 0.255831
Target:  5'- cGCCCCGGAccuuccGCGGgGGCuugCCCGCGcGGGCg -3'
miRNA:   3'- -CGGGGUUU------UGUCgCCG---GGGCGU-CUCG- -5'
23686 5' -58.4 NC_005261.1 + 16044 0.76 0.255831
Target:  5'- cGCCUUcuuGGGCAGCGGgCCCGCGccGAGCc -3'
miRNA:   3'- -CGGGGu--UUUGUCGCCgGGGCGU--CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.