miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23687 3' -56.1 NC_005261.1 + 118828 0.66 0.902661
Target:  5'- gGGCGCGgcacugccgcucugcGGcgCGGAGGgcggcgcgCCCGcGGCCc -3'
miRNA:   3'- -UCGCGCa--------------UCa-GCCUCCa-------GGGUuUCGG- -5'
23687 3' -56.1 NC_005261.1 + 25874 0.66 0.902028
Target:  5'- cAGCaaGUAGcgCGGAGGcUgCAAAGCUa -3'
miRNA:   3'- -UCGcgCAUCa-GCCUCCaGgGUUUCGG- -5'
23687 3' -56.1 NC_005261.1 + 46389 0.66 0.888872
Target:  5'- cGGCGcCGgccccGUCGccgacgguGGcGUCCCAGAGCCa -3'
miRNA:   3'- -UCGC-GCau---CAGCc-------UC-CAGGGUUUCGG- -5'
23687 3' -56.1 NC_005261.1 + 30992 0.66 0.888872
Target:  5'- aAGCGCa-AGUCGGccGGGgccaggggCCCGgcGCCg -3'
miRNA:   3'- -UCGCGcaUCAGCC--UCCa-------GGGUuuCGG- -5'
23687 3' -56.1 NC_005261.1 + 98292 0.66 0.888872
Target:  5'- cGGCGCGUccgcGGccUCGGGGGcgggCgCCGccGCCa -3'
miRNA:   3'- -UCGCGCA----UC--AGCCUCCa---G-GGUuuCGG- -5'
23687 3' -56.1 NC_005261.1 + 93771 0.66 0.888872
Target:  5'- cGCGCGgcGUCGcagcAGGUgccCCCGGGacGCCg -3'
miRNA:   3'- uCGCGCauCAGCc---UCCA---GGGUUU--CGG- -5'
23687 3' -56.1 NC_005261.1 + 60211 0.66 0.887506
Target:  5'- cGCGCGcucccgccgCGGGGcGccCCCAGGGCCg -3'
miRNA:   3'- uCGCGCauca-----GCCUC-Ca-GGGUUUCGG- -5'
23687 3' -56.1 NC_005261.1 + 72966 0.66 0.88613
Target:  5'- cGCGCccgccgccgCGGGGGUCCgCGAgcgcGGCCa -3'
miRNA:   3'- uCGCGcauca----GCCUCCAGG-GUU----UCGG- -5'
23687 3' -56.1 NC_005261.1 + 80217 0.66 0.881951
Target:  5'- cAGCGCGUugcugagcaucGGcCGGaAGGcCacgaCGAAGCCg -3'
miRNA:   3'- -UCGCGCA-----------UCaGCC-UCCaGg---GUUUCGG- -5'
23687 3' -56.1 NC_005261.1 + 109072 0.66 0.881951
Target:  5'- cGGCGCcucggcgaucauGccGUUGGccAGGUCCCGGAcGCCg -3'
miRNA:   3'- -UCGCG------------CauCAGCC--UCCAGGGUUU-CGG- -5'
23687 3' -56.1 NC_005261.1 + 25307 0.66 0.87912
Target:  5'- --aGCGUcGUCGGGGGguucgaaUCCCAGccccggcuugggggGGCCc -3'
miRNA:   3'- ucgCGCAuCAGCCUCC-------AGGGUU--------------UCGG- -5'
23687 3' -56.1 NC_005261.1 + 47070 0.66 0.874807
Target:  5'- gAGCGCGUGGUacgcgugcacgcCGaAGGcgggCCAGAGCCc -3'
miRNA:   3'- -UCGCGCAUCA------------GCcUCCag--GGUUUCGG- -5'
23687 3' -56.1 NC_005261.1 + 28900 0.67 0.862927
Target:  5'- uGCGCccaacgCGGAGGaaguugacgccgggCCCGAGGCCg -3'
miRNA:   3'- uCGCGcauca-GCCUCCa-------------GGGUUUCGG- -5'
23687 3' -56.1 NC_005261.1 + 94294 0.67 0.859872
Target:  5'- gAGCaugGCGUAGUCGGcgacccaggGGGgcgccagCCCGAAcucgcGCCg -3'
miRNA:   3'- -UCG---CGCAUCAGCC---------UCCa------GGGUUU-----CGG- -5'
23687 3' -56.1 NC_005261.1 + 17483 0.67 0.859872
Target:  5'- gGGCGCGccg--GGGGGUCCUAGAcGCg -3'
miRNA:   3'- -UCGCGCaucagCCUCCAGGGUUU-CGg -5'
23687 3' -56.1 NC_005261.1 + 106830 0.67 0.859872
Target:  5'- cAGCGCGUGGUgCGcGucGUCCagcccGCCg -3'
miRNA:   3'- -UCGCGCAUCA-GC-CucCAGGguuu-CGG- -5'
23687 3' -56.1 NC_005261.1 + 119683 0.67 0.859872
Target:  5'- cAGCGCG---UCGGcAGGUCCCGcu-CCa -3'
miRNA:   3'- -UCGCGCaucAGCC-UCCAGGGUuucGG- -5'
23687 3' -56.1 NC_005261.1 + 93377 0.67 0.852092
Target:  5'- cGGCGUG-AG-CaGGAGGUUgCAGAGCa -3'
miRNA:   3'- -UCGCGCaUCaG-CCUCCAGgGUUUCGg -5'
23687 3' -56.1 NC_005261.1 + 4968 0.67 0.852092
Target:  5'- cGGcCGCGgcGUccucuggggccCGGAGGgCgCCGAGGCCc -3'
miRNA:   3'- -UC-GCGCauCA-----------GCCUCCaG-GGUUUCGG- -5'
23687 3' -56.1 NC_005261.1 + 116161 0.67 0.852092
Target:  5'- cAGCGCGcGGUCGcGGccGcGUCCCcGAcGCCg -3'
miRNA:   3'- -UCGCGCaUCAGC-CU--C-CAGGGuUU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.