miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23687 5' -63 NC_005261.1 + 1730 0.66 0.595221
Target:  5'- aCGGGCaccgCGGugcgcGGGCCCaGGCGCGuGGCc -3'
miRNA:   3'- -GCCCGga--GCC-----UCUGGGgUCGCGU-CUG- -5'
23687 5' -63 NC_005261.1 + 56172 0.66 0.595221
Target:  5'- gGGGCCcgCGGGGAggaCgAcGCGCGGGCu -3'
miRNA:   3'- gCCCGGa-GCCUCUgg-GgU-CGCGUCUG- -5'
23687 5' -63 NC_005261.1 + 31007 0.66 0.595221
Target:  5'- gGGGCCa-GGGG--CCCGGCGCcGGCc -3'
miRNA:   3'- gCCCGGagCCUCugGGGUCGCGuCUG- -5'
23687 5' -63 NC_005261.1 + 61059 0.66 0.595221
Target:  5'- uGGGCCU-GGAGcACUucuuccugCCGGCGCucacGGGCa -3'
miRNA:   3'- gCCCGGAgCCUC-UGG--------GGUCGCG----UCUG- -5'
23687 5' -63 NC_005261.1 + 19035 0.66 0.595221
Target:  5'- gGGGCagcCGGAGAgCCgCCAG-GCAGGg -3'
miRNA:   3'- gCCCGga-GCCUCU-GG-GGUCgCGUCUg -5'
23687 5' -63 NC_005261.1 + 17852 0.66 0.595221
Target:  5'- aGGGCCUCGuaAGAgCggCCGGCcgGCAGGCc -3'
miRNA:   3'- gCCCGGAGCc-UCUgG--GGUCG--CGUCUG- -5'
23687 5' -63 NC_005261.1 + 68113 0.66 0.595221
Target:  5'- uCGGGCUggagcugCGcGGGCCgCGGCGCGG-Cg -3'
miRNA:   3'- -GCCCGGa------GCcUCUGGgGUCGCGUCuG- -5'
23687 5' -63 NC_005261.1 + 59431 0.66 0.585436
Target:  5'- gCGcGGCC-CGGcAGGCgCCGGCaGCAGcGCg -3'
miRNA:   3'- -GC-CCGGaGCC-UCUGgGGUCG-CGUC-UG- -5'
23687 5' -63 NC_005261.1 + 78058 0.66 0.585436
Target:  5'- gCGGGCC-CGGcccccgcgccGGCCCaGGCGCuGGCc -3'
miRNA:   3'- -GCCCGGaGCCu---------CUGGGgUCGCGuCUG- -5'
23687 5' -63 NC_005261.1 + 28124 0.66 0.585436
Target:  5'- gGGGCCUCGaggcGGGcGCCCuCGGCGCc--- -3'
miRNA:   3'- gCCCGGAGC----CUC-UGGG-GUCGCGucug -5'
23687 5' -63 NC_005261.1 + 29180 0.66 0.583482
Target:  5'- aGGGCC-CGGcgcccucgccgcGGCgCCC-GCGCGGGCg -3'
miRNA:   3'- gCCCGGaGCCu-----------CUG-GGGuCGCGUCUG- -5'
23687 5' -63 NC_005261.1 + 87936 0.66 0.579579
Target:  5'- gGGGCCU-GGAGccgcgcgccgccacgGCCcgCCGGCgGCGGGCu -3'
miRNA:   3'- gCCCGGAgCCUC---------------UGG--GGUCG-CGUCUG- -5'
23687 5' -63 NC_005261.1 + 1191 0.66 0.575681
Target:  5'- gGGGCCggGGccGGgCgCGGCGCGGACc -3'
miRNA:   3'- gCCCGGagCCu-CUgGgGUCGCGUCUG- -5'
23687 5' -63 NC_005261.1 + 63114 0.66 0.575681
Target:  5'- aCGGGuCCUCcacGAGcuCCCCGGUGCcgggGGGCu -3'
miRNA:   3'- -GCCC-GGAGc--CUCu-GGGGUCGCG----UCUG- -5'
23687 5' -63 NC_005261.1 + 105539 0.66 0.575681
Target:  5'- cCGGGaCUCGGGcuGGCCgCAcgcGCGCAGGg -3'
miRNA:   3'- -GCCCgGAGCCU--CUGGgGU---CGCGUCUg -5'
23687 5' -63 NC_005261.1 + 35314 0.66 0.575681
Target:  5'- cCGGGCugCUCGGGGAggccgggccuCCCCGuGUGCAaGCc -3'
miRNA:   3'- -GCCCG--GAGCCUCU----------GGGGU-CGCGUcUG- -5'
23687 5' -63 NC_005261.1 + 9121 0.66 0.575681
Target:  5'- aGGGCCgcCGG-GACUgggggCgGGUGCAGGCa -3'
miRNA:   3'- gCCCGGa-GCCuCUGG-----GgUCGCGUCUG- -5'
23687 5' -63 NC_005261.1 + 81492 0.66 0.569846
Target:  5'- aGGGCCgCGGcuAGcgcggcgcgcgcgccGCCgCCGGCGcCAGGCg -3'
miRNA:   3'- gCCCGGaGCC--UC---------------UGG-GGUCGC-GUCUG- -5'
23687 5' -63 NC_005261.1 + 29372 0.66 0.565964
Target:  5'- aGGGCCUCuGGGacuGCCCCGagaucCGCgAGGCg -3'
miRNA:   3'- gCCCGGAGcCUC---UGGGGUc----GCG-UCUG- -5'
23687 5' -63 NC_005261.1 + 37464 0.66 0.565964
Target:  5'- gCGGGUgCUCGccGGcACCCCGGCGUaucgGGACu -3'
miRNA:   3'- -GCCCG-GAGCc-UC-UGGGGUCGCG----UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.