miRNA display CGI


Results 21 - 40 of 525 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23688 3' -61.7 NC_005261.1 + 54775 0.66 0.636555
Target:  5'- cGGCGGGCgacaggacGGCGCGCCCcGC-CGc--- -3'
miRNA:   3'- -CCGCUCG--------UCGCGCGGGuCGuGCcugu -5'
23688 3' -61.7 NC_005261.1 + 71493 0.66 0.636555
Target:  5'- cGGCGgccAGguGCGCGCgaaAGUcgGCGGGCu -3'
miRNA:   3'- -CCGC---UCguCGCGCGgg-UCG--UGCCUGu -5'
23688 3' -61.7 NC_005261.1 + 57515 0.66 0.636555
Target:  5'- cGGCGGGCcuucuuccacaGGCacgGCGCggcGCACGGGCAc -3'
miRNA:   3'- -CCGCUCG-----------UCG---CGCGgguCGUGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 44278 0.66 0.636555
Target:  5'- gGGCGgggcccgccgccAGCGGCGgGCCagGGCcgcugcccGCGGGCGc -3'
miRNA:   3'- -CCGC------------UCGUCGCgCGGg-UCG--------UGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 64774 0.66 0.636555
Target:  5'- aGCucGCGGCGCGCCaCGacGUGCGGcGCAg -3'
miRNA:   3'- cCGcuCGUCGCGCGG-GU--CGUGCC-UGU- -5'
23688 3' -61.7 NC_005261.1 + 137011 0.66 0.636555
Target:  5'- cGGCcgGAG-AGCGCGgCCAGCAgaacggcguCGGugGa -3'
miRNA:   3'- -CCG--CUCgUCGCGCgGGUCGU---------GCCugU- -5'
23688 3' -61.7 NC_005261.1 + 126080 0.66 0.636555
Target:  5'- cGGCcucGGCGGgCGCGCCCAucuucGCGCGuACu -3'
miRNA:   3'- -CCGc--UCGUC-GCGCGGGU-----CGUGCcUGu -5'
23688 3' -61.7 NC_005261.1 + 50198 0.66 0.636555
Target:  5'- cGGUGcAGCAGCGCGucgaCCCGGUGCaaGCGc -3'
miRNA:   3'- -CCGC-UCGUCGCGC----GGGUCGUGccUGU- -5'
23688 3' -61.7 NC_005261.1 + 134562 0.66 0.63556
Target:  5'- uGCuGGGCGGCGCcgcggcuGCgCAGgGCGGGCc -3'
miRNA:   3'- cCG-CUCGUCGCG-------CGgGUCgUGCCUGu -5'
23688 3' -61.7 NC_005261.1 + 48034 0.66 0.626607
Target:  5'- gGGCGAGgAGCaCGCgC-GCGCGGuCGg -3'
miRNA:   3'- -CCGCUCgUCGcGCGgGuCGUGCCuGU- -5'
23688 3' -61.7 NC_005261.1 + 98592 0.66 0.626607
Target:  5'- gGGCGAGUAgGCgGCGCCC-GCaaaauccgGCGGGu- -3'
miRNA:   3'- -CCGCUCGU-CG-CGCGGGuCG--------UGCCUgu -5'
23688 3' -61.7 NC_005261.1 + 102538 0.66 0.626607
Target:  5'- uGGCcgccuGCGGCcccagGCGCCCGGC--GGACAc -3'
miRNA:   3'- -CCGcu---CGUCG-----CGCGGGUCGugCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 13670 0.66 0.626607
Target:  5'- cGCGGGgGGgGCGCggggcGCGCGGGCGu -3'
miRNA:   3'- cCGCUCgUCgCGCGggu--CGUGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 123168 0.66 0.626607
Target:  5'- gGGCGGGCGcGCGgGCgUGGUggcugguguggGCGGACc -3'
miRNA:   3'- -CCGCUCGU-CGCgCGgGUCG-----------UGCCUGu -5'
23688 3' -61.7 NC_005261.1 + 105436 0.66 0.626607
Target:  5'- aGGUcucGCu-CGCGCCguaCAGCGCGGACAc -3'
miRNA:   3'- -CCGcu-CGucGCGCGG---GUCGUGCCUGU- -5'
23688 3' -61.7 NC_005261.1 + 114989 0.66 0.626607
Target:  5'- uGGCGGGcCGGC-CGCCgCGGCcccggccccGCGGAg- -3'
miRNA:   3'- -CCGCUC-GUCGcGCGG-GUCG---------UGCCUgu -5'
23688 3' -61.7 NC_005261.1 + 1738 0.66 0.626607
Target:  5'- cGCGGuGC-GCGgGCCCAgGCGCGuGGCc -3'
miRNA:   3'- cCGCU-CGuCGCgCGGGU-CGUGC-CUGu -5'
23688 3' -61.7 NC_005261.1 + 93733 0.66 0.626607
Target:  5'- cGGCG-GCAGCGCGCgCuucGUACucGGCGg -3'
miRNA:   3'- -CCGCuCGUCGCGCGgGu--CGUGc-CUGU- -5'
23688 3' -61.7 NC_005261.1 + 124073 0.66 0.626607
Target:  5'- cGGcCGAcuGCAGCccgGCGCCCgcguAGCGCGcGCAc -3'
miRNA:   3'- -CC-GCU--CGUCG---CGCGGG----UCGUGCcUGU- -5'
23688 3' -61.7 NC_005261.1 + 81487 0.66 0.626607
Target:  5'- --aGAGCAGggcCGCGgCUAGCGCGGcGCGc -3'
miRNA:   3'- ccgCUCGUC---GCGCgGGUCGUGCC-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.