Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23689 | 3' | -53.5 | NC_005261.1 | + | 373 | 0.69 | 0.869407 |
Target: 5'- cGGUGGCGGCGGUGgCgGcGGcgGCggCg -3' miRNA: 3'- -CCAUCGCCGUCAUgGgCuUCa-CGaaG- -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 1447 | 0.68 | 0.88414 |
Target: 5'- --cAGCGGCGGcGCCuCGgcGUGCg-- -3' miRNA: 3'- ccaUCGCCGUCaUGG-GCuuCACGaag -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 11482 | 0.68 | 0.88414 |
Target: 5'- gGGgcggGGCGGgGGUGCCgGcucGAG-GCUUCu -3' miRNA: 3'- -CCa---UCGCCgUCAUGGgC---UUCaCGAAG- -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 12762 | 0.68 | 0.876889 |
Target: 5'- aGGUcguaGGCGGCGGUGgCgGggG-GCUcgUCg -3' miRNA: 3'- -CCA----UCGCCGUCAUgGgCuuCaCGA--AG- -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 13092 | 0.7 | 0.828762 |
Target: 5'- cGGcgGGCGGCGGgcucgGCUCGggG-GCgUCg -3' miRNA: 3'- -CCa-UCGCCGUCa----UGGGCuuCaCGaAG- -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 16831 | 1.12 | 0.002614 |
Target: 5'- cGGUAGCGGCAGUACCCGAAGUGCUUCu -3' miRNA: 3'- -CCAUCGCCGUCAUGGGCUUCACGAAG- -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 20664 | 0.7 | 0.828762 |
Target: 5'- cGGUGGCGGCAGcgGCa--GAGUGgaUCa -3' miRNA: 3'- -CCAUCGCCGUCa-UGggcUUCACgaAG- -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 22986 | 0.67 | 0.915597 |
Target: 5'- aGGaGGCGGCGGaggaagagggggGCCCGGAG-GCg-- -3' miRNA: 3'- -CCaUCGCCGUCa-----------UGGGCUUCaCGaag -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 32389 | 0.67 | 0.928103 |
Target: 5'- cGgcGCGGCGGcguCCCGGAGcGCg-- -3' miRNA: 3'- cCauCGCCGUCau-GGGCUUCaCGaag -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 33610 | 0.73 | 0.672826 |
Target: 5'- cGGcgcgGGCGGCGGgGCCCGggG-GCg-- -3' miRNA: 3'- -CCa---UCGCCGUCaUGGGCuuCaCGaag -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 36828 | 0.68 | 0.88414 |
Target: 5'- cGGUAuGCGGUgccGGcGCCCGggG-GCUa- -3' miRNA: 3'- -CCAU-CGCCG---UCaUGGGCuuCaCGAag -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 38275 | 0.67 | 0.933384 |
Target: 5'- uGGgGGCGGCuGGUGCaCGcGGUGCUg- -3' miRNA: 3'- -CCaUCGCCG-UCAUGgGCuUCACGAag -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 38310 | 0.66 | 0.956052 |
Target: 5'- --gAGCGcGCAGggcgGCCCGAuGGUGUUc- -3' miRNA: 3'- ccaUCGC-CGUCa---UGGGCU-UCACGAag -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 41114 | 0.68 | 0.897931 |
Target: 5'- ---cGCGGCGG-GCCCG-AGcGCUUCc -3' miRNA: 3'- ccauCGCCGUCaUGGGCuUCaCGAAG- -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 46353 | 0.68 | 0.88414 |
Target: 5'- cGGUc-CGGCAGgggaACCCGAcgaAGUGCUc- -3' miRNA: 3'- -CCAucGCCGUCa---UGGGCU---UCACGAag -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 49397 | 0.68 | 0.904463 |
Target: 5'- --cAGCGuGCAGcGCUCGAagaGGUGCUUg -3' miRNA: 3'- ccaUCGC-CGUCaUGGGCU---UCACGAAg -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 56156 | 0.67 | 0.938414 |
Target: 5'- gGGUGGCGGCAGcggcgggGCCCGcGGg----- -3' miRNA: 3'- -CCAUCGCCGUCa------UGGGCuUCacgaag -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 62267 | 0.68 | 0.904463 |
Target: 5'- uGGUAGCGGC---GCCCGuuGUGgUa- -3' miRNA: 3'- -CCAUCGCCGucaUGGGCuuCACgAag -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 65814 | 0.69 | 0.84564 |
Target: 5'- gGGUgcccgGGCGGCGGcgcgaagcUGCCCG-AGUGCcgCg -3' miRNA: 3'- -CCA-----UCGCCGUC--------AUGGGCuUCACGaaG- -5' |
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23689 | 3' | -53.5 | NC_005261.1 | + | 68871 | 0.66 | 0.956052 |
Target: 5'- ---cGCGGCuGUGCgCCGucGUGCg-- -3' miRNA: 3'- ccauCGCCGuCAUG-GGCuuCACGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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