miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23689 3' -53.5 NC_005261.1 + 11482 0.68 0.88414
Target:  5'- gGGgcggGGCGGgGGUGCCgGcucGAG-GCUUCu -3'
miRNA:   3'- -CCa---UCGCCgUCAUGGgC---UUCaCGAAG- -5'
23689 3' -53.5 NC_005261.1 + 12762 0.68 0.876889
Target:  5'- aGGUcguaGGCGGCGGUGgCgGggG-GCUcgUCg -3'
miRNA:   3'- -CCA----UCGCCGUCAUgGgCuuCaCGA--AG- -5'
23689 3' -53.5 NC_005261.1 + 129649 0.68 0.876151
Target:  5'- cGGUGGCGGCGGcgGCggcaggggcgggaCCGggG-GCgUCg -3'
miRNA:   3'- -CCAUCGCCGUCa-UG-------------GGCuuCaCGaAG- -5'
23689 3' -53.5 NC_005261.1 + 138044 0.69 0.869407
Target:  5'- cGGUGGCGGCGGUGgCgGcGGcgGCggCg -3'
miRNA:   3'- -CCAUCGCCGUCAUgGgCuUCa-CGaaG- -5'
23689 3' -53.5 NC_005261.1 + 373 0.69 0.869407
Target:  5'- cGGUGGCGGCGGUGgCgGcGGcgGCggCg -3'
miRNA:   3'- -CCAUCGCCGUCAUgGgCuUCa-CGaaG- -5'
23689 3' -53.5 NC_005261.1 + 91172 0.69 0.869407
Target:  5'- --gGGCGGCAGcuCCCGccGgGCUUCg -3'
miRNA:   3'- ccaUCGCCGUCauGGGCuuCaCGAAG- -5'
23689 3' -53.5 NC_005261.1 + 88027 0.69 0.853776
Target:  5'- --cGGcCGGCGGUGCCUGggG-GCggUCc -3'
miRNA:   3'- ccaUC-GCCGUCAUGGGCuuCaCGa-AG- -5'
23689 3' -53.5 NC_005261.1 + 65814 0.69 0.84564
Target:  5'- gGGUgcccgGGCGGCGGcgcgaagcUGCCCG-AGUGCcgCg -3'
miRNA:   3'- -CCA-----UCGCCGUC--------AUGGGCuUCACGaaG- -5'
23689 3' -53.5 NC_005261.1 + 69310 0.69 0.84564
Target:  5'- cGGUGGCGGCGGgAgCgGggGUGaCggCg -3'
miRNA:   3'- -CCAUCGCCGUCaUgGgCuuCAC-GaaG- -5'
23689 3' -53.5 NC_005261.1 + 20664 0.7 0.828762
Target:  5'- cGGUGGCGGCAGcgGCa--GAGUGgaUCa -3'
miRNA:   3'- -CCAUCGCCGUCa-UGggcUUCACgaAG- -5'
23689 3' -53.5 NC_005261.1 + 13092 0.7 0.828762
Target:  5'- cGGcgGGCGGCGGgcucgGCUCGggG-GCgUCg -3'
miRNA:   3'- -CCa-UCGCCGUCa----UGGGCuuCaCGaAG- -5'
23689 3' -53.5 NC_005261.1 + 120634 0.7 0.792814
Target:  5'- uGGUGGCGGCccuGUGCCUGcGGcGCa-- -3'
miRNA:   3'- -CCAUCGCCGu--CAUGGGCuUCaCGaag -5'
23689 3' -53.5 NC_005261.1 + 121391 0.71 0.754424
Target:  5'- --cGGCGGCGGcgccUGCCCG-AGUGCg-- -3'
miRNA:   3'- ccaUCGCCGUC----AUGGGCuUCACGaag -5'
23689 3' -53.5 NC_005261.1 + 73292 0.72 0.724404
Target:  5'- gGGUAGCacaGGCAGgcgGCCagGggGUGCcggUCa -3'
miRNA:   3'- -CCAUCG---CCGUCa--UGGg-CuuCACGa--AG- -5'
23689 3' -53.5 NC_005261.1 + 33610 0.73 0.672826
Target:  5'- cGGcgcgGGCGGCGGgGCCCGggG-GCg-- -3'
miRNA:   3'- -CCa---UCGCCGUCaUGGGCuuCaCGaag -5'
23689 3' -53.5 NC_005261.1 + 97965 0.75 0.557792
Target:  5'- aGGUGGCGGCggagcGGUGCCCGggGa----- -3'
miRNA:   3'- -CCAUCGCCG-----UCAUGGGCuuCacgaag -5'
23689 3' -53.5 NC_005261.1 + 16831 1.12 0.002614
Target:  5'- cGGUAGCGGCAGUACCCGAAGUGCUUCu -3'
miRNA:   3'- -CCAUCGCCGUCAUGGGCUUCACGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.