miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23689 5' -50.5 NC_005261.1 + 110778 0.66 0.993037
Target:  5'- cCGCcgagaacGUGCUCCGg--GGgACGGCGGg -3'
miRNA:   3'- aGCGa------CAUGAGGUacaUCaUGUCGCC- -5'
23689 5' -50.5 NC_005261.1 + 109851 0.66 0.991976
Target:  5'- cCGUUGguggcgGCUCCug--GGgGCAGCGGg -3'
miRNA:   3'- aGCGACa-----UGAGGuacaUCaUGUCGCC- -5'
23689 5' -50.5 NC_005261.1 + 104502 0.66 0.991976
Target:  5'- gUCGUgcagccGCUCCGUGgcGgccgcgACGGCGGc -3'
miRNA:   3'- -AGCGaca---UGAGGUACauCa-----UGUCGCC- -5'
23689 5' -50.5 NC_005261.1 + 17097 0.67 0.989472
Target:  5'- gUGgUGUgccagcGCUCgAUGUAGUuguaucgcgGCGGCGGg -3'
miRNA:   3'- aGCgACA------UGAGgUACAUCA---------UGUCGCC- -5'
23689 5' -50.5 NC_005261.1 + 96120 0.67 0.989472
Target:  5'- gUCGCUGg---CCAUGgucgaccUGCGGCGGc -3'
miRNA:   3'- -AGCGACaugaGGUACauc----AUGUCGCC- -5'
23689 5' -50.5 NC_005261.1 + 2557 0.67 0.98801
Target:  5'- gCGCUGggcGCgggCGUGUGGUACuccccgGGCGGc -3'
miRNA:   3'- aGCGACa--UGag-GUACAUCAUG------UCGCC- -5'
23689 5' -50.5 NC_005261.1 + 54029 0.67 0.986396
Target:  5'- uUCGCgcacGcGCUCCGUGUAccGCGcGCGGu -3'
miRNA:   3'- -AGCGa---CaUGAGGUACAUcaUGU-CGCC- -5'
23689 5' -50.5 NC_005261.1 + 52260 0.67 0.98462
Target:  5'- gCGCUGUccGCgCCGgggggcgGUGGUcacgACGGCGGu -3'
miRNA:   3'- aGCGACA--UGaGGUa------CAUCA----UGUCGCC- -5'
23689 5' -50.5 NC_005261.1 + 56963 0.67 0.982673
Target:  5'- gCGCg--GCUCCGgcaGUGGUucgGCAGCGa -3'
miRNA:   3'- aGCGacaUGAGGUa--CAUCA---UGUCGCc -5'
23689 5' -50.5 NC_005261.1 + 76315 0.68 0.980546
Target:  5'- cCGCUGUucacCUCCGcggUGUAa-GCGGCGGc -3'
miRNA:   3'- aGCGACAu---GAGGU---ACAUcaUGUCGCC- -5'
23689 5' -50.5 NC_005261.1 + 12265 0.68 0.979871
Target:  5'- cUCGCUGUcGCUCuCGcUGUAGUagcaguccgcguccGCcGCGGg -3'
miRNA:   3'- -AGCGACA-UGAG-GU-ACAUCA--------------UGuCGCC- -5'
23689 5' -50.5 NC_005261.1 + 113868 0.68 0.970063
Target:  5'- cUCG-UGUGCUCCGggugccaccUGUAGcggcgacGCGGCGGg -3'
miRNA:   3'- -AGCgACAUGAGGU---------ACAUCa------UGUCGCC- -5'
23689 5' -50.5 NC_005261.1 + 30009 0.69 0.963527
Target:  5'- gCGuCUGaGCUCCcgGUgcucucGGcUGCAGCGGg -3'
miRNA:   3'- aGC-GACaUGAGGuaCA------UC-AUGUCGCC- -5'
23689 5' -50.5 NC_005261.1 + 115361 0.69 0.950243
Target:  5'- aCGCUGUGCgccuccacgguugCCGgcgucGUGGUcuuCAGCGGg -3'
miRNA:   3'- aGCGACAUGa------------GGUa----CAUCAu--GUCGCC- -5'
23689 5' -50.5 NC_005261.1 + 64254 0.71 0.916127
Target:  5'- cCGCUgGUACgCCAUcaucagcacgccGUGGUGCAGCGc -3'
miRNA:   3'- aGCGA-CAUGaGGUA------------CAUCAUGUCGCc -5'
23689 5' -50.5 NC_005261.1 + 104796 0.73 0.817452
Target:  5'- aUCGC-GUGCUCCAgcgGGUcccgcuccGCAGCGGc -3'
miRNA:   3'- -AGCGaCAUGAGGUacaUCA--------UGUCGCC- -5'
23689 5' -50.5 NC_005261.1 + 134889 0.75 0.76055
Target:  5'- cUGCUGUGCgUUcgGUGGUGgAGCGGg -3'
miRNA:   3'- aGCGACAUGaGGuaCAUCAUgUCGCC- -5'
23689 5' -50.5 NC_005261.1 + 43630 0.76 0.678175
Target:  5'- gUGCUGUgggcGC-CCGUGUGGcGCGGCGGu -3'
miRNA:   3'- aGCGACA----UGaGGUACAUCaUGUCGCC- -5'
23689 5' -50.5 NC_005261.1 + 24373 0.77 0.614368
Target:  5'- -gGCgGUGCUCCcgGUGGgcucgucgGCGGCGGg -3'
miRNA:   3'- agCGaCAUGAGGuaCAUCa-------UGUCGCC- -5'
23689 5' -50.5 NC_005261.1 + 16869 1.11 0.006901
Target:  5'- cUCGCUGUACUCCAUGUAGUACAGCGGc -3'
miRNA:   3'- -AGCGACAUGAGGUACAUCAUGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.