miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2369 3' -45 NC_001416.1 + 21961 0.66 0.995816
Target:  5'- uGAcgGUGUUUUccgcguuacccGCAGCGUuaacgguGAUGGuGUg -3'
miRNA:   3'- -UUuaCACAAAA-----------UGUCGCA-------CUACCuCG- -5'
2369 3' -45 NC_001416.1 + 17137 0.72 0.886933
Target:  5'- uGAcgGUGUUgcugaaUACAGCGUaugGGAGCu -3'
miRNA:   3'- -UUuaCACAAa-----AUGUCGCAcuaCCUCG- -5'
2369 3' -45 NC_001416.1 + 3680 0.74 0.791288
Target:  5'- ---cGUGUUcUGCAGCGUGuc-GAGCa -3'
miRNA:   3'- uuuaCACAAaAUGUCGCACuacCUCG- -5'
2369 3' -45 NC_001416.1 + 3575 1.12 0.005517
Target:  5'- cAAAUGUGUUUUACAGCGUGAUGGAGCa -3'
miRNA:   3'- -UUUACACAAAAUGUCGCACUACCUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.