miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2369 5' -54.8 NC_001416.1 + 3609 1.07 0.001034
Target:  5'- gAUGCUCGACACGCUGCAGAACACGCAg -3'
miRNA:   3'- -UACGAGCUGUGCGACGUCUUGUGCGU- -5'
2369 5' -54.8 NC_001416.1 + 16514 0.73 0.275023
Target:  5'- cUGCUCGGCgauGCGCUGUaugccgguauGGAACGgGCAg -3'
miRNA:   3'- uACGAGCUG---UGCGACG----------UCUUGUgCGU- -5'
2369 5' -54.8 NC_001416.1 + 16281 0.71 0.363388
Target:  5'- -aGUUCGacgGCAC-CUGCAGAAUACGCc -3'
miRNA:   3'- uaCGAGC---UGUGcGACGUCUUGUGCGu -5'
2369 5' -54.8 NC_001416.1 + 9833 0.71 0.369635
Target:  5'- gAUGCUCaAUGCGCUGCAGGGCugacaguucagaaaGCGUg -3'
miRNA:   3'- -UACGAGcUGUGCGACGUCUUG--------------UGCGu -5'
2369 5' -54.8 NC_001416.1 + 24162 0.69 0.480027
Target:  5'- cGUGCUgCGGCugGCUGguGAACuucCGa- -3'
miRNA:   3'- -UACGA-GCUGugCGACguCUUGu--GCgu -5'
2369 5' -54.8 NC_001416.1 + 44378 0.68 0.533771
Target:  5'- -aGCgCGAUAUGCUGCGcuuGCugGCAu -3'
miRNA:   3'- uaCGaGCUGUGCGACGUcu-UGugCGU- -5'
2369 5' -54.8 NC_001416.1 + 11328 0.68 0.555878
Target:  5'- -cGC-CGACACGUUaUGGAACugGCGa -3'
miRNA:   3'- uaCGaGCUGUGCGAcGUCUUGugCGU- -5'
2369 5' -54.8 NC_001416.1 + 2873 0.66 0.668807
Target:  5'- -gGCaUGACAuCGCUGCGcGAAUAUGCc -3'
miRNA:   3'- uaCGaGCUGU-GCGACGU-CUUGUGCGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.