miRNA display CGI


Results 21 - 40 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23690 3' -63.2 NC_005261.1 + 71152 0.66 0.528438
Target:  5'- -cGCCGC-CCCgGCAGGCUcugggaugaacGCGUcCGg -3'
miRNA:   3'- caCGGCGaGGG-CGUCCGA-----------CGCGuGCa -5'
23690 3' -63.2 NC_005261.1 + 131947 0.66 0.528438
Target:  5'- gGUGcCCGCgCCCGUcuaccggguGGaGCUGCcGCGCGg -3'
miRNA:   3'- -CAC-GGCGaGGGCG---------UC-CGACG-CGUGCa -5'
23690 3' -63.2 NC_005261.1 + 101088 0.66 0.528438
Target:  5'- -cGCgGCcgCCUGCAGcGCggccGCGCGCGc -3'
miRNA:   3'- caCGgCGa-GGGCGUC-CGa---CGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 73763 0.66 0.52748
Target:  5'- -gGCCGCUUCuacgaggCGCuGGCcugcgacgUGCGCGCGg -3'
miRNA:   3'- caCGGCGAGG-------GCGuCCG--------ACGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 122705 0.66 0.518885
Target:  5'- -cGCCGCg-CCGCcGGCcGCGC-CGUc -3'
miRNA:   3'- caCGGCGagGGCGuCCGaCGCGuGCA- -5'
23690 3' -63.2 NC_005261.1 + 50626 0.66 0.518885
Target:  5'- uUGgUGCUCCaCGCGGGCggcggggugGCGC-CGg -3'
miRNA:   3'- cACgGCGAGG-GCGUCCGa--------CGCGuGCa -5'
23690 3' -63.2 NC_005261.1 + 42197 0.66 0.518885
Target:  5'- -aGCCGCUCCacggcgccgCGCGGGCgccccGC-CGCGa -3'
miRNA:   3'- caCGGCGAGG---------GCGUCCGa----CGcGUGCa -5'
23690 3' -63.2 NC_005261.1 + 134567 0.66 0.518885
Target:  5'- -gGCgGCg-CCGC-GGCUGCGCAgGg -3'
miRNA:   3'- caCGgCGagGGCGuCCGACGCGUgCa -5'
23690 3' -63.2 NC_005261.1 + 134518 0.66 0.518885
Target:  5'- -aGCCuGCgCCUGCAGcuGCUGgGCGCGc -3'
miRNA:   3'- caCGG-CGaGGGCGUC--CGACgCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 2662 0.66 0.513186
Target:  5'- -gGCgGCUCCCGCcgcgcuggggacccGGCgGCGCGCc- -3'
miRNA:   3'- caCGgCGAGGGCGu-------------CCGaCGCGUGca -5'
23690 3' -63.2 NC_005261.1 + 113305 0.66 0.509401
Target:  5'- cUGCCGCgggCCUGgGcccGGCUGCGCGa-- -3'
miRNA:   3'- cACGGCGa--GGGCgU---CCGACGCGUgca -5'
23690 3' -63.2 NC_005261.1 + 28556 0.66 0.509401
Target:  5'- cUGCucgaCGCggCCCGcCGGGCcgagGCGCGCGa -3'
miRNA:   3'- cACG----GCGa-GGGC-GUCCGa---CGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 33767 0.66 0.509401
Target:  5'- -cGCuCGCggggCCCGC-GGCgaGCGCugGg -3'
miRNA:   3'- caCG-GCGa---GGGCGuCCGa-CGCGugCa -5'
23690 3' -63.2 NC_005261.1 + 133837 0.66 0.509401
Target:  5'- -gGCCGCgugCgCGCcguGGCcgGCGCGCGc -3'
miRNA:   3'- caCGGCGa--GgGCGu--CCGa-CGCGUGCa -5'
23690 3' -63.2 NC_005261.1 + 64053 0.66 0.509401
Target:  5'- -cGCCGCguggUgCGCcaccGGCUGCcGCACGg -3'
miRNA:   3'- caCGGCGa---GgGCGu---CCGACG-CGUGCa -5'
23690 3' -63.2 NC_005261.1 + 46938 0.66 0.509401
Target:  5'- gGUGCucaCGCggCCCGCGGGCcaguccGCGC-CGUc -3'
miRNA:   3'- -CACG---GCGa-GGGCGUCCGa-----CGCGuGCA- -5'
23690 3' -63.2 NC_005261.1 + 70664 0.66 0.509401
Target:  5'- -cGCCGCggCCGCGGGC--CGCACc- -3'
miRNA:   3'- caCGGCGagGGCGUCCGacGCGUGca -5'
23690 3' -63.2 NC_005261.1 + 75532 0.66 0.509401
Target:  5'- -cGCCGCg-CUGCAgcGGCUGCGCGu-- -3'
miRNA:   3'- caCGGCGagGGCGU--CCGACGCGUgca -5'
23690 3' -63.2 NC_005261.1 + 35775 0.66 0.509401
Target:  5'- -gGCCGagacaggaggCCCGCGGGCgccaugGCGCGgGa -3'
miRNA:   3'- caCGGCga--------GGGCGUCCGa-----CGCGUgCa -5'
23690 3' -63.2 NC_005261.1 + 98480 0.66 0.509401
Target:  5'- -gGCCGUcCuCCGCGGGCUcGgGCGgGUa -3'
miRNA:   3'- caCGGCGaG-GGCGUCCGA-CgCGUgCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.