miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23690 5' -59.7 NC_005261.1 + 33058 0.72 0.356667
Target:  5'- -aGGAcucgGCGCCGGGgacgcGGCGCuGGCGGCc -3'
miRNA:   3'- uaUCUa---CGCGGCCC-----UCGUG-CCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 79819 0.72 0.356667
Target:  5'- ---cAUGCGCgCGGcGGCGCGGCGGCc -3'
miRNA:   3'- uaucUACGCG-GCCcUCGUGCCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 47711 0.72 0.356667
Target:  5'- -cGGcgGCGUCGGGGGCcuccuCGGCGGaCAc -3'
miRNA:   3'- uaUCuaCGCGGCCCUCGu----GCCGUC-GU- -5'
23690 5' -59.7 NC_005261.1 + 75873 0.72 0.364629
Target:  5'- --cGAcgGCGCCGuGGGCGCGcGCAGCGg -3'
miRNA:   3'- uauCUa-CGCGGCcCUCGUGC-CGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 121781 0.71 0.372714
Target:  5'- gGUGGccGCgGCCGGcGGGCugGGCAGgGg -3'
miRNA:   3'- -UAUCuaCG-CGGCC-CUCGugCCGUCgU- -5'
23690 5' -59.7 NC_005261.1 + 20574 0.71 0.380919
Target:  5'- -cAGcgGCGCCGGcGGCGCGGguGg- -3'
miRNA:   3'- uaUCuaCGCGGCCcUCGUGCCguCgu -5'
23690 5' -59.7 NC_005261.1 + 98079 0.71 0.380919
Target:  5'- -cGGGUGUGUCcuuggagaaucuGGGGGCGCGGCgGGCGg -3'
miRNA:   3'- uaUCUACGCGG------------CCCUCGUGCCG-UCGU- -5'
23690 5' -59.7 NC_005261.1 + 74850 0.71 0.389244
Target:  5'- -gGGAggcggcGCGCCGGGcggaggaggcGGaCGCGGCGGCGg -3'
miRNA:   3'- uaUCUa-----CGCGGCCC----------UC-GUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 127645 0.71 0.403668
Target:  5'- -cGGcgGCGCCGGGGggcgcGCggguucggggcgggACGGCGGCGg -3'
miRNA:   3'- uaUCuaCGCGGCCCU-----CG--------------UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 64880 0.71 0.406249
Target:  5'- -cAGcgGCGgCGGGAGCGcCGGgucCAGCAg -3'
miRNA:   3'- uaUCuaCGCgGCCCUCGU-GCC---GUCGU- -5'
23690 5' -59.7 NC_005261.1 + 137085 0.71 0.406249
Target:  5'- cAUGGcgGCGCaggagcuagUGGGAGCggacccgcGCGGCGGCGu -3'
miRNA:   3'- -UAUCuaCGCG---------GCCCUCG--------UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 23173 0.71 0.414924
Target:  5'- -cAGgcGCGCCGGGGGCgACaGCgAGCGc -3'
miRNA:   3'- uaUCuaCGCGGCCCUCG-UGcCG-UCGU- -5'
23690 5' -59.7 NC_005261.1 + 29979 0.71 0.414924
Target:  5'- --cGGUGCGCCGccGGcGCGucCGGCAGCGg -3'
miRNA:   3'- uauCUACGCGGC--CCuCGU--GCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 90190 0.7 0.423712
Target:  5'- -gGGAgGaCGCaGGGAGCGCGGgGGCGg -3'
miRNA:   3'- uaUCUaC-GCGgCCCUCGUGCCgUCGU- -5'
23690 5' -59.7 NC_005261.1 + 44215 0.7 0.43261
Target:  5'- -aGGcgGC-CCGGGAGCGCGcGCuGCu -3'
miRNA:   3'- uaUCuaCGcGGCCCUCGUGC-CGuCGu -5'
23690 5' -59.7 NC_005261.1 + 43338 0.7 0.441616
Target:  5'- cGUAGAcuggcucgUGUGCCuGGGGCuggugccgcuGCGGCGGCAu -3'
miRNA:   3'- -UAUCU--------ACGCGGcCCUCG----------UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 47881 0.7 0.450728
Target:  5'- -----aGCGuCCgGGGAGCgGCGGCGGCGg -3'
miRNA:   3'- uaucuaCGC-GG-CCCUCG-UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 74513 0.7 0.450728
Target:  5'- -gGGcgGCGCCGGGGcCAUGGCgcuugGGCGc -3'
miRNA:   3'- uaUCuaCGCGGCCCUcGUGCCG-----UCGU- -5'
23690 5' -59.7 NC_005261.1 + 22649 0.7 0.450728
Target:  5'- cUAGAcGCGCUGGcGGCGCcugGGCGGCGc -3'
miRNA:   3'- uAUCUaCGCGGCCcUCGUG---CCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 97842 0.7 0.450728
Target:  5'- -cGGggGCGgCGGGcGCcgccGCGGCAGCGc -3'
miRNA:   3'- uaUCuaCGCgGCCCuCG----UGCCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.