miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23690 5' -59.7 NC_005261.1 + 9118 0.67 0.597379
Target:  5'- -gAGAggGcCGCCGGGAcuggGgGCGGguGCAg -3'
miRNA:   3'- uaUCUa-C-GCGGCCCU----CgUGCCguCGU- -5'
23690 5' -59.7 NC_005261.1 + 11102 0.66 0.689274
Target:  5'- -gGGAcGCGaCGGGAcgagauGCGcCGGCAGCGu -3'
miRNA:   3'- uaUCUaCGCgGCCCU------CGU-GCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 12086 0.68 0.587195
Target:  5'- -----cGCGCCGGGgcggcucaaaGGCGCGGCgccAGCu -3'
miRNA:   3'- uaucuaCGCGGCCC----------UCGUGCCG---UCGu -5'
23690 5' -59.7 NC_005261.1 + 12940 0.68 0.56693
Target:  5'- cGUAGGUGCGCUucuGGcccGCGCGGCGcGCGc -3'
miRNA:   3'- -UAUCUACGCGGc--CCu--CGUGCCGU-CGU- -5'
23690 5' -59.7 NC_005261.1 + 13096 0.68 0.587195
Target:  5'- -gGGcgGCGggcucggcUCGGGGGCGuCGGCGGCc -3'
miRNA:   3'- uaUCuaCGC--------GGCCCUCGU-GCCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 14310 0.69 0.507423
Target:  5'- --cGGUaGC-CCGaGGAGCgACGGCGGCAg -3'
miRNA:   3'- uauCUA-CGcGGC-CCUCG-UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 14361 0.69 0.488163
Target:  5'- -cAGccGCgGCCGGGgcGGCGCGGUGGCc -3'
miRNA:   3'- uaUCuaCG-CGGCCC--UCGUGCCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 14828 1.06 0.001463
Target:  5'- uAUAGAUGCGCCGGGAGCACGGCAGCAg -3'
miRNA:   3'- -UAUCUACGCGGCCCUCGUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 14995 0.68 0.56693
Target:  5'- -cGGccGCGCCcGGAGCGCGGgAGgAg -3'
miRNA:   3'- uaUCuaCGCGGcCCUCGUGCCgUCgU- -5'
23690 5' -59.7 NC_005261.1 + 15274 0.68 0.56693
Target:  5'- -cGGcgGCGCCGccGGGGCGCGcggucGCGGCc -3'
miRNA:   3'- uaUCuaCGCGGC--CCUCGUGC-----CGUCGu -5'
23690 5' -59.7 NC_005261.1 + 16292 0.68 0.556863
Target:  5'- -gGGggGCGCCGucGGGCccaGCGGCGGCc -3'
miRNA:   3'- uaUCuaCGCGGCc-CUCG---UGCCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 17482 0.68 0.577043
Target:  5'- -cGGgcGCGCCGGGGGguccuagaCGCGG-AGCAu -3'
miRNA:   3'- uaUCuaCGCGGCCCUC--------GUGCCgUCGU- -5'
23690 5' -59.7 NC_005261.1 + 20278 0.67 0.628058
Target:  5'- -cGGGUcGUGUcgCGGGGGCGCGcuuGCGGCAg -3'
miRNA:   3'- uaUCUA-CGCG--GCCCUCGUGC---CGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 20574 0.71 0.380919
Target:  5'- -cAGcgGCGCCGGcGGCGCGGguGg- -3'
miRNA:   3'- uaUCuaCGCGGCCcUCGUGCCguCgu -5'
23690 5' -59.7 NC_005261.1 + 21176 0.7 0.469255
Target:  5'- -gAGAUGCaGCCGcuggcgcGAGCGCGGCcGCGg -3'
miRNA:   3'- uaUCUACG-CGGCc------CUCGUGCCGuCGU- -5'
23690 5' -59.7 NC_005261.1 + 21754 0.68 0.587195
Target:  5'- ----cUGCGCCuGGAGCGCGcGCcgGGCGa -3'
miRNA:   3'- uaucuACGCGGcCCUCGUGC-CG--UCGU- -5'
23690 5' -59.7 NC_005261.1 + 22649 0.7 0.450728
Target:  5'- cUAGAcGCGCUGGcGGCGCcugGGCGGCGc -3'
miRNA:   3'- uAUCUaCGCGGCCcUCGUG---CCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 23016 0.69 0.504513
Target:  5'- -aGGcgGCccgcgaacgccuuuGCCGGGAGgggACGGCGGCAg -3'
miRNA:   3'- uaUCuaCG--------------CGGCCCUCg--UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 23173 0.71 0.414924
Target:  5'- -cAGgcGCGCCGGGGGCgACaGCgAGCGc -3'
miRNA:   3'- uaUCuaCGCGGCCCUCG-UGcCG-UCGU- -5'
23690 5' -59.7 NC_005261.1 + 23198 0.69 0.478663
Target:  5'- -----nGCGCCGcGGGGCccgcaGCGGCGGCc -3'
miRNA:   3'- uaucuaCGCGGC-CCUCG-----UGCCGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.