miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23690 5' -59.7 NC_005261.1 + 115417 0.66 0.67914
Target:  5'- -gGGcgGCaGCCGGGGcCGCGGCccgAGCu -3'
miRNA:   3'- uaUCuaCG-CGGCCCUcGUGCCG---UCGu -5'
23690 5' -59.7 NC_005261.1 + 113890 0.66 0.689274
Target:  5'- uGUAGcgGCGaCgCGGcGGGCGCgauggccgaGGCAGCGg -3'
miRNA:   3'- -UAUCuaCGC-G-GCC-CUCGUG---------CCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 108726 0.67 0.617818
Target:  5'- -aAGA-GCGCgCGGGccaGCGGCGGCGc -3'
miRNA:   3'- uaUCUaCGCG-GCCCucgUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 107579 0.66 0.699362
Target:  5'- aGUAGGgcGCgaagGCCGGGucccgcAGgACGGCAGCGg -3'
miRNA:   3'- -UAUCUa-CG----CGGCCC------UCgUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 107540 0.66 0.689274
Target:  5'- -cGGcgGCcaccagcacGuCCGaGAGCACGGCAGCGg -3'
miRNA:   3'- uaUCuaCG---------C-GGCcCUCGUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 104661 0.68 0.54585
Target:  5'- -----cGCGCUGGcGGGCgugugcuGCGGCAGCGc -3'
miRNA:   3'- uaucuaCGCGGCC-CUCG-------UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 103866 0.66 0.689274
Target:  5'- -cGGcgGCGgCGGGgcGGCGCcgccgGGCGGCGc -3'
miRNA:   3'- uaUCuaCGCgGCCC--UCGUG-----CCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 103611 0.7 0.469255
Target:  5'- -cGGcgGCaGCgCGGGAG-GCGGCGGCGg -3'
miRNA:   3'- uaUCuaCG-CG-GCCCUCgUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 103282 0.69 0.507423
Target:  5'- -----cGCGCCGGGuGcCGCGcGCAGCc -3'
miRNA:   3'- uaucuaCGCGGCCCuC-GUGC-CGUCGu -5'
23690 5' -59.7 NC_005261.1 + 100725 0.66 0.658763
Target:  5'- -cGGccGCGCCGcGcGcgcGCGCGGCGGCGc -3'
miRNA:   3'- uaUCuaCGCGGC-C-Cu--CGUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 100269 0.67 0.617818
Target:  5'- --cGgcGCGCCGGuGGcGCACGaaGCGGCAg -3'
miRNA:   3'- uauCuaCGCGGCC-CU-CGUGC--CGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 98183 0.81 0.095924
Target:  5'- uUGGAgcCGCCGGGGGCGCGGCGGgCAg -3'
miRNA:   3'- uAUCUacGCGGCCCUCGUGCCGUC-GU- -5'
23690 5' -59.7 NC_005261.1 + 98079 0.71 0.380919
Target:  5'- -cGGGUGUGUCcuuggagaaucuGGGGGCGCGGCgGGCGg -3'
miRNA:   3'- uaUCUACGCGG------------CCCUCGUGCCG-UCGU- -5'
23690 5' -59.7 NC_005261.1 + 97998 0.77 0.16553
Target:  5'- aGUGGGagGCGgCGGGGGCGCuGGCGGCGa -3'
miRNA:   3'- -UAUCUa-CGCgGCCCUCGUG-CCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 97842 0.7 0.450728
Target:  5'- -cGGggGCGgCGGGcGCcgccGCGGCAGCGc -3'
miRNA:   3'- uaUCuaCGCgGCCCuCG----UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 97419 0.67 0.627034
Target:  5'- -cGGgcGCGCCGGGccugcccuugGGCGCgggucugggcuucGGCGGCGc -3'
miRNA:   3'- uaUCuaCGCGGCCC----------UCGUG-------------CCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 97084 0.67 0.607589
Target:  5'- -cGGAgGCGCCGGcuGGGC-CGGgGGCGc -3'
miRNA:   3'- uaUCUaCGCGGCC--CUCGuGCCgUCGU- -5'
23690 5' -59.7 NC_005261.1 + 96859 0.67 0.628058
Target:  5'- -gGGggGCuCgGGGGGCGCGgGUAGCGu -3'
miRNA:   3'- uaUCuaCGcGgCCCUCGUGC-CGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 95762 0.74 0.252111
Target:  5'- -cGGggGCGCCGGGAGCcucGCGcGCuGCGc -3'
miRNA:   3'- uaUCuaCGCGGCCCUCG---UGC-CGuCGU- -5'
23690 5' -59.7 NC_005261.1 + 95659 0.66 0.67914
Target:  5'- --cGcgGCGCCGcgacGGGCGCGGguGUg -3'
miRNA:   3'- uauCuaCGCGGCc---CUCGUGCCguCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.