miRNA display CGI


Results 41 - 60 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23690 5' -59.7 NC_005261.1 + 5490 0.75 0.234496
Target:  5'- -----cGCGCCGGGGGguagcuggggcCGCGGCAGCGg -3'
miRNA:   3'- uaucuaCGCGGCCCUC-----------GUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 95762 0.74 0.252111
Target:  5'- -cGGggGCGCCGGGAGCcucGCGcGCuGCGc -3'
miRNA:   3'- uaUCuaCGCGGCCCUCG---UGC-CGuCGU- -5'
23690 5' -59.7 NC_005261.1 + 51004 0.74 0.26445
Target:  5'- cGUGGgcGCGgCGGGAGCuCGGCgAGCGc -3'
miRNA:   3'- -UAUCuaCGCgGCCCUCGuGCCG-UCGU- -5'
23690 5' -59.7 NC_005261.1 + 58016 0.73 0.307223
Target:  5'- cGUGGAaGUGCCgcggcggcagcuccaGGGAGCGCGGCcGCGu -3'
miRNA:   3'- -UAUCUaCGCGG---------------CCCUCGUGCCGuCGU- -5'
23690 5' -59.7 NC_005261.1 + 72449 0.73 0.311493
Target:  5'- -cGGggGCGCCcgcGGcGAGCGCGGCgAGCGc -3'
miRNA:   3'- uaUCuaCGCGG---CC-CUCGUGCCG-UCGU- -5'
23690 5' -59.7 NC_005261.1 + 132622 0.73 0.318711
Target:  5'- -aGGggGCGCUGGcgccgaggacgcGGGCGCGGCGGCc -3'
miRNA:   3'- uaUCuaCGCGGCC------------CUCGUGCCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 14828 1.06 0.001463
Target:  5'- uAUAGAUGCGCCGGGAGCACGGCAGCAg -3'
miRNA:   3'- -UAUCUACGCGGCCCUCGUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 383 0.72 0.33352
Target:  5'- gGUGGcgGCGgCGGcGGCgGCGGCGGCAg -3'
miRNA:   3'- -UAUCuaCGCgGCCcUCG-UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 138054 0.72 0.33352
Target:  5'- gGUGGcgGCGgCGGcGGCgGCGGCGGCAg -3'
miRNA:   3'- -UAUCuaCGCgGCCcUCG-UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 48312 0.72 0.338821
Target:  5'- -gGGggGCGCgucgggcccgggcuCGGGGGCGCGcGCGGCGa -3'
miRNA:   3'- uaUCuaCGCG--------------GCCCUCGUGC-CGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 69769 0.72 0.3465
Target:  5'- -gGGcgGCGCCGGGgacugAGCcgcucccgcggcgcGCGGCGGCGc -3'
miRNA:   3'- uaUCuaCGCGGCCC-----UCG--------------UGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 33058 0.72 0.356667
Target:  5'- -aGGAcucgGCGCCGGGgacgcGGCGCuGGCGGCc -3'
miRNA:   3'- uaUCUa---CGCGGCCC-----UCGUG-CCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 47711 0.72 0.356667
Target:  5'- -cGGcgGCGUCGGGGGCcuccuCGGCGGaCAc -3'
miRNA:   3'- uaUCuaCGCGGCCCUCGu----GCCGUC-GU- -5'
23690 5' -59.7 NC_005261.1 + 79819 0.72 0.356667
Target:  5'- ---cAUGCGCgCGGcGGCGCGGCGGCc -3'
miRNA:   3'- uaucUACGCG-GCCcUCGUGCCGUCGu -5'
23690 5' -59.7 NC_005261.1 + 75873 0.72 0.364629
Target:  5'- --cGAcgGCGCCGuGGGCGCGcGCAGCGg -3'
miRNA:   3'- uauCUa-CGCGGCcCUCGUGC-CGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 121781 0.71 0.372714
Target:  5'- gGUGGccGCgGCCGGcGGGCugGGCAGgGg -3'
miRNA:   3'- -UAUCuaCG-CGGCC-CUCGugCCGUCgU- -5'
23690 5' -59.7 NC_005261.1 + 20574 0.71 0.380919
Target:  5'- -cAGcgGCGCCGGcGGCGCGGguGg- -3'
miRNA:   3'- uaUCuaCGCGGCCcUCGUGCCguCgu -5'
23690 5' -59.7 NC_005261.1 + 98079 0.71 0.380919
Target:  5'- -cGGGUGUGUCcuuggagaaucuGGGGGCGCGGCgGGCGg -3'
miRNA:   3'- uaUCUACGCGG------------CCCUCGUGCCG-UCGU- -5'
23690 5' -59.7 NC_005261.1 + 74850 0.71 0.389244
Target:  5'- -gGGAggcggcGCGCCGGGcggaggaggcGGaCGCGGCGGCGg -3'
miRNA:   3'- uaUCUa-----CGCGGCCC----------UC-GUGCCGUCGU- -5'
23690 5' -59.7 NC_005261.1 + 127645 0.71 0.403668
Target:  5'- -cGGcgGCGCCGGGGggcgcGCggguucggggcgggACGGCGGCGg -3'
miRNA:   3'- uaUCuaCGCGGCCCU-----CG--------------UGCCGUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.