miRNA display CGI


Results 61 - 80 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 86340 0.67 0.994457
Target:  5'- gCGCGu--CCAugucguuGC-GCCCGGCGa -3'
miRNA:   3'- -GCGCuuuGGUuaaau--UGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 87632 0.67 0.991432
Target:  5'- gCGCGAAcgccGCCuccacgGugAGCCCGcGCa -3'
miRNA:   3'- -GCGCUU----UGGuuaaa-UugUCGGGC-CGc -5'
23691 3' -49.7 NC_005261.1 + 81211 0.67 0.991432
Target:  5'- gCGCGAgccgGACCAccgUGGC-GCCCgagGGCGg -3'
miRNA:   3'- -GCGCU----UUGGUuaaAUUGuCGGG---CCGC- -5'
23691 3' -49.7 NC_005261.1 + 67887 0.67 0.993564
Target:  5'- gCGCGGGuaagcGCCGcAUUUAACccggcGCCCGGgGc -3'
miRNA:   3'- -GCGCUU-----UGGU-UAAAUUGu----CGGGCCgC- -5'
23691 3' -49.7 NC_005261.1 + 50556 0.67 0.993564
Target:  5'- gCGCGcGGACCAcggucACGcGCCUGGCGu -3'
miRNA:   3'- -GCGC-UUUGGUuaaauUGU-CGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 106080 0.67 0.993275
Target:  5'- uGCGGAACCccac-AGCGGCgaucgcgacgucggCCGGCGu -3'
miRNA:   3'- gCGCUUUGGuuaaaUUGUCG--------------GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 29688 0.67 0.992559
Target:  5'- gGCGcuGCCGcacgUGGCGGCCUGcGUGg -3'
miRNA:   3'- gCGCuuUGGUuaa-AUUGUCGGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 59593 0.67 0.994287
Target:  5'- cCGCGccGCCAccaccuccGCGGCgCGGCGg -3'
miRNA:   3'- -GCGCuuUGGUuaaau---UGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 109256 0.67 0.994541
Target:  5'- uGCGggGCCAcgaaguccagcgAGCugAGCCCGGaCGc -3'
miRNA:   3'- gCGCuuUGGUuaaa--------UUG--UCGGGCC-GC- -5'
23691 3' -49.7 NC_005261.1 + 1876 0.67 0.994457
Target:  5'- cCGCGAGGCCAGc---ACGGCgCGcGCc -3'
miRNA:   3'- -GCGCUUUGGUUaaauUGUCGgGC-CGc -5'
23691 3' -49.7 NC_005261.1 + 102546 0.67 0.992559
Target:  5'- uGCGGccCCAG----GC-GCCCGGCGg -3'
miRNA:   3'- gCGCUuuGGUUaaauUGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 106725 0.67 0.993564
Target:  5'- aGCGGcccACCucgu--GCAGCCCcGGCGc -3'
miRNA:   3'- gCGCUu--UGGuuaaauUGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 5418 0.67 0.994457
Target:  5'- cCGCGAacgaaggagacGACC------GCGGCCgCGGCGg -3'
miRNA:   3'- -GCGCU-----------UUGGuuaaauUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 31084 0.67 0.993564
Target:  5'- cCGCGugcuGGGCCccau--GCcGCCCGGCGg -3'
miRNA:   3'- -GCGC----UUUGGuuaaauUGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 96959 0.67 0.994457
Target:  5'- gGCGggGCagccgccgggcgCGAUUcacGCGGCCuCGGCGc -3'
miRNA:   3'- gCGCuuUG------------GUUAAau-UGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 31631 0.67 0.994785
Target:  5'- aCGCGGGACCuggccuuccGCGGCgCGGuCGa -3'
miRNA:   3'- -GCGCUUUGGuuaaau---UGUCGgGCC-GC- -5'
23691 3' -49.7 NC_005261.1 + 71421 0.67 0.993469
Target:  5'- gCGCGggGCC-------CGGCCCGGg- -3'
miRNA:   3'- -GCGCuuUGGuuaaauuGUCGGGCCgc -5'
23691 3' -49.7 NC_005261.1 + 35791 0.67 0.993564
Target:  5'- cCGCGGGcGCCAuggcgcggGACGGCCUGGa- -3'
miRNA:   3'- -GCGCUU-UGGUuaaa----UUGUCGGGCCgc -5'
23691 3' -49.7 NC_005261.1 + 52965 0.67 0.991432
Target:  5'- aGCGccgcGCCGGU---GCGGCgCCGGCa -3'
miRNA:   3'- gCGCuu--UGGUUAaauUGUCG-GGCCGc -5'
23691 3' -49.7 NC_005261.1 + 74422 0.67 0.991432
Target:  5'- gGCGGgagGGCCGAggagAGCGccccCCCGGCGg -3'
miRNA:   3'- gCGCU---UUGGUUaaa-UUGUc---GGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.