miRNA display CGI


Results 81 - 100 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 81211 0.67 0.991432
Target:  5'- gCGCGAgccgGACCAccgUGGC-GCCCgagGGCGg -3'
miRNA:   3'- -GCGCU----UUGGUuaaAUUGuCGGG---CCGC- -5'
23691 3' -49.7 NC_005261.1 + 87632 0.67 0.991432
Target:  5'- gCGCGAAcgccGCCuccacgGugAGCCCGcGCa -3'
miRNA:   3'- -GCGCUU----UGGuuaaa-UugUCGGGC-CGc -5'
23691 3' -49.7 NC_005261.1 + 74228 0.67 0.993564
Target:  5'- -uCGAGGCUA---UAAUAGCCgGGCGc -3'
miRNA:   3'- gcGCUUUGGUuaaAUUGUCGGgCCGC- -5'
23691 3' -49.7 NC_005261.1 + 90775 0.67 0.993564
Target:  5'- cCGcCGAGGCCGcu---GCGGCggCCGGCGc -3'
miRNA:   3'- -GC-GCUUUGGUuaaauUGUCG--GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 106725 0.67 0.993564
Target:  5'- aGCGGcccACCucgu--GCAGCCCcGGCGc -3'
miRNA:   3'- gCGCUu--UGGuuaaauUGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 230 0.67 0.991432
Target:  5'- uCGCG-GGCCccgcgAGCgGGCCCGGCu -3'
miRNA:   3'- -GCGCuUUGGuuaaaUUG-UCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 104532 0.67 0.991432
Target:  5'- gGCGGccgccACCAGgc--GCAGCuuGGCGu -3'
miRNA:   3'- gCGCUu----UGGUUaaauUGUCGggCCGC- -5'
23691 3' -49.7 NC_005261.1 + 48084 0.67 0.990946
Target:  5'- aGCGAGACCccgcagauGCAGC-CGGUGc -3'
miRNA:   3'- gCGCUUUGGuuaaau--UGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 97503 0.67 0.990567
Target:  5'- gCGcCGggGCCGccggaacGUUUcggcucgccgcgaucGGCGGCCCcGGCGg -3'
miRNA:   3'- -GC-GCuuUGGU-------UAAA---------------UUGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 123895 0.67 0.990176
Target:  5'- uCGCGGAagGCCGccgcuGUgggguGCGGCCCGaGCa -3'
miRNA:   3'- -GCGCUU--UGGU-----UAaau--UGUCGGGC-CGc -5'
23691 3' -49.7 NC_005261.1 + 3829 0.67 0.990176
Target:  5'- cCGCGGGcCCGGgcgcUGGCGGCagCGGCGc -3'
miRNA:   3'- -GCGCUUuGGUUaa--AUUGUCGg-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 52965 0.67 0.991432
Target:  5'- aGCGccgcGCCGGU---GCGGCgCCGGCa -3'
miRNA:   3'- gCGCuu--UGGUUAaauUGUCG-GGCCGc -5'
23691 3' -49.7 NC_005261.1 + 47733 0.68 0.981598
Target:  5'- gGCGGAcACCA-----GCAGCCCgcuGGCGu -3'
miRNA:   3'- gCGCUU-UGGUuaaauUGUCGGG---CCGC- -5'
23691 3' -49.7 NC_005261.1 + 135109 0.68 0.981811
Target:  5'- gCGCGAGGCgGAccccgcgucuccGCAGCgCGGCGg -3'
miRNA:   3'- -GCGCUUUGgUUaaau--------UGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 50423 0.68 0.983651
Target:  5'- uCGCGGAGCCGcucguGCAGCgUGcGCGu -3'
miRNA:   3'- -GCGCUUUGGUuaaauUGUCGgGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 137020 0.68 0.983651
Target:  5'- aGCGcgGCCAGcagAACGGCgUCGGUGg -3'
miRNA:   3'- gCGCuuUGGUUaaaUUGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 110226 0.68 0.980724
Target:  5'- gGCGAcGCCuccagcgugGGCGGCgCGGCGc -3'
miRNA:   3'- gCGCUuUGGuuaaa----UUGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 76859 0.68 0.983651
Target:  5'- uCGCGccGCC----UGGC-GCCCGGCGa -3'
miRNA:   3'- -GCGCuuUGGuuaaAUUGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 105262 0.68 0.983651
Target:  5'- gCGCGAcaGGCuCGGcgggcGGCAGCgCCGGCGa -3'
miRNA:   3'- -GCGCU--UUG-GUUaaa--UUGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 15346 0.68 0.985526
Target:  5'- aCGCG--GCCAGgggaaaGACGuCCCGGCGg -3'
miRNA:   3'- -GCGCuuUGGUUaaa---UUGUcGGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.