miRNA display CGI


Results 101 - 120 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 28442 0.68 0.981598
Target:  5'- cCGCGGccGGCCA---UGGCGucuCCCGGCGg -3'
miRNA:   3'- -GCGCU--UUGGUuaaAUUGUc--GGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 110226 0.68 0.980724
Target:  5'- gGCGAcGCCuccagcgugGGCGGCgCGGCGc -3'
miRNA:   3'- gCGCUuUGGuuaaa----UUGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 15346 0.68 0.985526
Target:  5'- aCGCG--GCCAGgggaaaGACGuCCCGGCGg -3'
miRNA:   3'- -GCGCuuUGGUUaaa---UUGUcGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 43996 0.68 0.985526
Target:  5'- aCGUGGAcACCucc----CAGCCCGGCu -3'
miRNA:   3'- -GCGCUU-UGGuuaaauuGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 108222 0.68 0.985526
Target:  5'- gCGCGcu-CCAGcaUGGCGcacguGCCCGGCGu -3'
miRNA:   3'- -GCGCuuuGGUUaaAUUGU-----CGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 31039 0.68 0.981598
Target:  5'- gCGCGccGCCGGgucccCAGCgCGGCGg -3'
miRNA:   3'- -GCGCuuUGGUUaaauuGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 73811 0.68 0.988925
Target:  5'- gCGCaGAAGCCGcgcccgcgccUAGCCCGGCu -3'
miRNA:   3'- -GCG-CUUUGGUuaaauu----GUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 83305 0.68 0.988779
Target:  5'- gCGCGGggUCGu----GCAGCUCgGGCGg -3'
miRNA:   3'- -GCGCUuuGGUuaaauUGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 74063 0.68 0.988482
Target:  5'- uGCGGcAGCUgcgcgacGCGGCCCGGCu -3'
miRNA:   3'- gCGCU-UUGGuuaaau-UGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 89826 0.68 0.987232
Target:  5'- cCGCGGcacuucgcGGCCGGgccgGAgGGCCgCGGCGu -3'
miRNA:   3'- -GCGCU--------UUGGUUaaa-UUgUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 75457 0.68 0.987232
Target:  5'- -aCGggGCCAGUUccaGGC-GCCgGGCGg -3'
miRNA:   3'- gcGCuuUGGUUAAa--UUGuCGGgCCGC- -5'
23691 3' -49.7 NC_005261.1 + 135465 0.68 0.988779
Target:  5'- uGCGGGACCucgu--ACuGCgCGGCGa -3'
miRNA:   3'- gCGCUUUGGuuaaauUGuCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 71578 0.68 0.988779
Target:  5'- cCGCGAgcucccguAGCCGAUcacgUAggcccgccgccGCGGCCCgGGCGc -3'
miRNA:   3'- -GCGCU--------UUGGUUAa---AU-----------UGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 33046 0.68 0.985526
Target:  5'- cCGCGGAggGCCAGgacu-CGGCgCCGGgGa -3'
miRNA:   3'- -GCGCUU--UGGUUaaauuGUCG-GGCCgC- -5'
23691 3' -49.7 NC_005261.1 + 35694 0.68 0.988779
Target:  5'- gGCGAGccccgguggGCCGGgggcucggUGGCGGcCCCGGCc -3'
miRNA:   3'- gCGCUU---------UGGUUaa------AUUGUC-GGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 93512 0.68 0.985526
Target:  5'- cCGCGgcGCCGugUUGGCcgcgaggaAGCCCGcGCGc -3'
miRNA:   3'- -GCGCuuUGGUuaAAUUG--------UCGGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 108646 0.69 0.979357
Target:  5'- cCGCGAAgGCCuccgc--CAGCCCcGGCGu -3'
miRNA:   3'- -GCGCUU-UGGuuaaauuGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 65830 0.69 0.979357
Target:  5'- gCGCGAAGCUgcccgAGUgccgcgagUAGCGGuCCgCGGCGg -3'
miRNA:   3'- -GCGCUUUGG-----UUAa-------AUUGUC-GG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 17294 0.69 0.979357
Target:  5'- cCGaCGAGgcuauauacccgGCCGGggUcGCGGCCCGGCc -3'
miRNA:   3'- -GC-GCUU------------UGGUUaaAuUGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 110930 0.69 0.97692
Target:  5'- cCGCGcugggcACCGAgc--GCcGCCCGGCGg -3'
miRNA:   3'- -GCGCuu----UGGUUaaauUGuCGGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.