miRNA display CGI


Results 121 - 140 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 70672 0.69 0.973724
Target:  5'- cCGCGGgccgcaccuccAGCCAGgcguccagcGCGGCCCGcGCGg -3'
miRNA:   3'- -GCGCU-----------UUGGUUaaau-----UGUCGGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 49134 0.69 0.973161
Target:  5'- gGCGGGACCcccgcgcgcagguAUUUGuccgcaaagGCGGCCaCGGCGg -3'
miRNA:   3'- gCGCUUUGGu------------UAAAU---------UGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 130857 0.69 0.971422
Target:  5'- gCGCGcccGGCCGGgcgccGCGGCCUGGCc -3'
miRNA:   3'- -GCGCu--UUGGUUaaau-UGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 32130 0.69 0.971422
Target:  5'- cCGCGccGCCAAccgcUGGgGGCUCGGCGc -3'
miRNA:   3'- -GCGCuuUGGUUaa--AUUgUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 120588 0.69 0.971422
Target:  5'- aGCGucguGGCCGucgccuGCGGCCuCGGCGc -3'
miRNA:   3'- gCGCu---UUGGUuaaau-UGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 108166 0.69 0.971422
Target:  5'- gCGCGuccGCCAGggcgcGCGGCCgCGGCu -3'
miRNA:   3'- -GCGCuu-UGGUUaaau-UGUCGG-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 13864 0.69 0.974278
Target:  5'- gGCGucGCCG-----GCGGCCCGGUc -3'
miRNA:   3'- gCGCuuUGGUuaaauUGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 111468 0.69 0.974278
Target:  5'- gGCGAGGCCAAaa-GGCGGgCgGGUGa -3'
miRNA:   3'- gCGCUUUGGUUaaaUUGUCgGgCCGC- -5'
23691 3' -49.7 NC_005261.1 + 33501 0.69 0.974278
Target:  5'- cCGCGAGcACCAGg--GGCGGCggCGGCa -3'
miRNA:   3'- -GCGCUU-UGGUUaaaUUGUCGg-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 117919 0.69 0.979122
Target:  5'- gCGCGGgaacgaaGGCCGGcu--GCGGCCCGuGCGc -3'
miRNA:   3'- -GCGCU-------UUGGUUaaauUGUCGGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 17294 0.69 0.979357
Target:  5'- cCGaCGAGgcuauauacccgGCCGGggUcGCGGCCCGGCc -3'
miRNA:   3'- -GC-GCUU------------UGGUUaaAuUGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 65830 0.69 0.979357
Target:  5'- gCGCGAAGCUgcccgAGUgccgcgagUAGCGGuCCgCGGCGg -3'
miRNA:   3'- -GCGCUUUGG-----UUAa-------AUUGUC-GG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 108646 0.69 0.979357
Target:  5'- cCGCGAAgGCCuccgc--CAGCCCcGGCGu -3'
miRNA:   3'- -GCGCUU-UGGuuaaauuGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 115856 0.69 0.97692
Target:  5'- gCGCGGcccccGCCGA---GGCGcGCCCGGCa -3'
miRNA:   3'- -GCGCUu----UGGUUaaaUUGU-CGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 93577 0.69 0.97692
Target:  5'- gGCGGGACgCGAUc--GCGcGCUCGGCGa -3'
miRNA:   3'- gCGCUUUG-GUUAaauUGU-CGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 55209 0.69 0.97692
Target:  5'- gCGCGGAuCCG-----GCGGCCCgaGGCGg -3'
miRNA:   3'- -GCGCUUuGGUuaaauUGUCGGG--CCGC- -5'
23691 3' -49.7 NC_005261.1 + 19395 0.69 0.97692
Target:  5'- aGCGggGCuCGGUgau-CGGCCCGuGUGc -3'
miRNA:   3'- gCGCuuUG-GUUAaauuGUCGGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 55678 0.69 0.97692
Target:  5'- gGCGAuuuucGGCCAGcacGGCGGCCaCGGCc -3'
miRNA:   3'- gCGCU-----UUGGUUaaaUUGUCGG-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 86661 0.69 0.974551
Target:  5'- aGCuGAAcACCAuggcgcccacCAGCCCGGCGa -3'
miRNA:   3'- gCG-CUU-UGGUuaaauu----GUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 125681 0.69 0.974278
Target:  5'- cCGCcGAAUgGGUUUGccggGCuuGGCCCGGCGa -3'
miRNA:   3'- -GCGcUUUGgUUAAAU----UG--UCGGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.