miRNA display CGI


Results 61 - 80 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 127364 0.7 0.961501
Target:  5'- cCGCGugGCUAGgaugucgUUGGCggcggcgaggAGCCCGGCGc -3'
miRNA:   3'- -GCGCuuUGGUUa------AAUUG----------UCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 91135 0.7 0.963654
Target:  5'- gGcCGAGGCCucagccguGCcGCCCGGCGa -3'
miRNA:   3'- gC-GCUUUGGuuaaau--UGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 55053 0.7 0.965041
Target:  5'- gCGCGggGCCG-----GCgAGCUCGGCc -3'
miRNA:   3'- -GCGCuuUGGUuaaauUG-UCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 5549 0.7 0.965041
Target:  5'- aGCGAGACgGGg--GGC-GCCCGaGCGg -3'
miRNA:   3'- gCGCUUUGgUUaaaUUGuCGGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 135011 0.7 0.965041
Target:  5'- gCGCGGcgGGCCcgcac-GCGGCCgCGGCGg -3'
miRNA:   3'- -GCGCU--UUGGuuaaauUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 105945 0.7 0.965041
Target:  5'- cCGCGAGcgcGCCGuc--GAUGGCCuCGGCGc -3'
miRNA:   3'- -GCGCUU---UGGUuaaaUUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 88820 0.7 0.965382
Target:  5'- gGCGggGCgGcggcgcgcgcCGGCCCGGCGu -3'
miRNA:   3'- gCGCuuUGgUuaaauu----GUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 135081 0.7 0.957721
Target:  5'- gGCGGcgGGCUc-----GCGGCCCGGCGg -3'
miRNA:   3'- gCGCU--UUGGuuaaauUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 115418 0.7 0.957721
Target:  5'- gGCGGcAGCCGGggccGCGGCCCGaGCu -3'
miRNA:   3'- gCGCU-UUGGUUaaauUGUCGGGC-CGc -5'
23691 3' -49.7 NC_005261.1 + 12575 0.7 0.957721
Target:  5'- aCGCGggGCCGAgaggGGC-GCCUaGCGg -3'
miRNA:   3'- -GCGCuuUGGUUaaa-UUGuCGGGcCGC- -5'
23691 3' -49.7 NC_005261.1 + 113526 0.7 0.949416
Target:  5'- gCGCGAGGCCAGc----CGGCUCGGgGc -3'
miRNA:   3'- -GCGCUUUGGUUaaauuGUCGGGCCgC- -5'
23691 3' -49.7 NC_005261.1 + 3865 0.7 0.949855
Target:  5'- cCGCGcgGCCGGcgagcacggcgcGCAGCUCGGCGa -3'
miRNA:   3'- -GCGCuuUGGUUaaau--------UGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 57744 0.7 0.953694
Target:  5'- cCGCGuagGACCAcc---ACAcGCCCGGCGc -3'
miRNA:   3'- -GCGCu--UUGGUuaaauUGU-CGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 77031 0.7 0.953694
Target:  5'- aCGcCGAGGCCGcgcgcGCGGCCCucGGCGa -3'
miRNA:   3'- -GC-GCUUUGGUuaaauUGUCGGG--CCGC- -5'
23691 3' -49.7 NC_005261.1 + 134187 0.7 0.953694
Target:  5'- uGCGGAggGCCuggc--GCGGCUCGGCGc -3'
miRNA:   3'- gCGCUU--UGGuuaaauUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 62865 0.7 0.953694
Target:  5'- aCGCGGcGGCCu-UUUAugcgcggcGCAGCCCGcGCGa -3'
miRNA:   3'- -GCGCU-UUGGuuAAAU--------UGUCGGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 75194 0.7 0.953694
Target:  5'- uCGCG-GACCuucaUGGCGGCCgCGGUGg -3'
miRNA:   3'- -GCGCuUUGGuuaaAUUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 128055 0.7 0.953694
Target:  5'- uGUGGAACCGGgccaUGGCGGgCgGGCGg -3'
miRNA:   3'- gCGCUUUGGUUaa--AUUGUCgGgCCGC- -5'
23691 3' -49.7 NC_005261.1 + 79141 0.7 0.957721
Target:  5'- gGCG--GCCAc-----CAGCCCGGCGa -3'
miRNA:   3'- gCGCuuUGGUuaaauuGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 20482 0.69 0.968346
Target:  5'- uGCGGAgcaaaGCCGAgcgcUGACAGCgggCCGGCu -3'
miRNA:   3'- gCGCUU-----UGGUUaa--AUUGUCG---GGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.