Results 101 - 120 of 234 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23691 | 3' | -49.7 | NC_005261.1 | + | 71778 | 0.69 | 0.968346 |
Target: 5'- cCGCGGcccgcucgcAGCUGAgc--GCGGCCCGGCc -3' miRNA: 3'- -GCGCU---------UUGGUUaaauUGUCGGGCCGc -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 55456 | 0.69 | 0.968346 |
Target: 5'- gCGCGGugGGCCAGUcgucgcUUAACAcGUCCGGUc -3' miRNA: 3'- -GCGCU--UUGGUUA------AAUUGU-CGGGCCGc -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 38535 | 0.69 | 0.968346 |
Target: 5'- gCGCGc-GCCGGgc--ACAGCgCCGGCGc -3' miRNA: 3'- -GCGCuuUGGUUaaauUGUCG-GGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 5146 | 0.69 | 0.968346 |
Target: 5'- uCGCGc-GCCu------CGGCCCGGCGg -3' miRNA: 3'- -GCGCuuUGGuuaaauuGUCGGGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 4935 | 0.69 | 0.968346 |
Target: 5'- cCGCGAGcGCCcgcgccGCGGCCCaGGCGc -3' miRNA: 3'- -GCGCUU-UGGuuaaauUGUCGGG-CCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 45602 | 0.69 | 0.968346 |
Target: 5'- gGCGAucuACCAcaccGGCGGCgCGGCGc -3' miRNA: 3'- gCGCUu--UGGUuaaaUUGUCGgGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 20482 | 0.69 | 0.968346 |
Target: 5'- uGCGGAgcaaaGCCGAgcgcUGACAGCgggCCGGCu -3' miRNA: 3'- gCGCUU-----UGGUUaa--AUUGUCG---GGCCGc -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 93646 | 0.69 | 0.967379 |
Target: 5'- gCGCGAGguccgcguacgcccACCGGUccgcgggcGGCGGCgCCGGCGg -3' miRNA: 3'- -GCGCUU--------------UGGUUAaa------UUGUCG-GGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 96073 | 0.69 | 0.968346 |
Target: 5'- aCGCccGAgCAGgugaguGCGGCCCGGCGc -3' miRNA: 3'- -GCGcuUUgGUUaaau--UGUCGGGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 113909 | 0.69 | 0.968346 |
Target: 5'- gCGCGAuGGCCGAggcAGCGGgCgCGGCGa -3' miRNA: 3'- -GCGCU-UUGGUUaaaUUGUCgG-GCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 32130 | 0.69 | 0.971422 |
Target: 5'- cCGCGccGCCAAccgcUGGgGGCUCGGCGc -3' miRNA: 3'- -GCGCuuUGGUUaa--AUUgUCGGGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 120588 | 0.69 | 0.971422 |
Target: 5'- aGCGucguGGCCGucgccuGCGGCCuCGGCGc -3' miRNA: 3'- gCGCu---UUGGUuaaau-UGUCGG-GCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 118217 | 0.69 | 0.971422 |
Target: 5'- gCGCGggGCgc---UGACGGCCgCGGCc -3' miRNA: 3'- -GCGCuuUGguuaaAUUGUCGG-GCCGc -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 108166 | 0.69 | 0.971422 |
Target: 5'- gCGCGuccGCCAGggcgcGCGGCCgCGGCu -3' miRNA: 3'- -GCGCuu-UGGUUaaau-UGUCGG-GCCGc -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 92935 | 0.69 | 0.971422 |
Target: 5'- gGCGGAGCa------GCuGCCCGGCGu -3' miRNA: 3'- gCGCUUUGguuaaauUGuCGGGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 82865 | 0.69 | 0.971422 |
Target: 5'- aGCGAAGgCGGc--GACGGCgCUGGCGg -3' miRNA: 3'- gCGCUUUgGUUaaaUUGUCG-GGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 74316 | 0.69 | 0.970523 |
Target: 5'- aCGCGAGACCGGgagAccgagaccgagaccGCAGgCgCGGCGg -3' miRNA: 3'- -GCGCUUUGGUUaaaU--------------UGUCgG-GCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 127086 | 0.69 | 0.968346 |
Target: 5'- cCGCGccGCCGcaaUGACGGCUgGGCGc -3' miRNA: 3'- -GCGCuuUGGUuaaAUUGUCGGgCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 47733 | 0.68 | 0.981598 |
Target: 5'- gGCGGAcACCA-----GCAGCCCgcuGGCGu -3' miRNA: 3'- gCGCUU-UGGUuaaauUGUCGGG---CCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 28442 | 0.68 | 0.981598 |
Target: 5'- cCGCGGccGGCCA---UGGCGucuCCCGGCGg -3' miRNA: 3'- -GCGCU--UUGGUuaaAUUGUc--GGGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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