miRNA display CGI


Results 81 - 100 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 127086 0.69 0.968346
Target:  5'- cCGCGccGCCGcaaUGACGGCUgGGCGc -3'
miRNA:   3'- -GCGCuuUGGUuaaAUUGUCGGgCCGC- -5'
23691 3' -49.7 NC_005261.1 + 113909 0.69 0.968346
Target:  5'- gCGCGAuGGCCGAggcAGCGGgCgCGGCGa -3'
miRNA:   3'- -GCGCU-UUGGUUaaaUUGUCgG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 96073 0.69 0.968346
Target:  5'- aCGCccGAgCAGgugaguGCGGCCCGGCGc -3'
miRNA:   3'- -GCGcuUUgGUUaaau--UGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 71778 0.69 0.968346
Target:  5'- cCGCGGcccgcucgcAGCUGAgc--GCGGCCCGGCc -3'
miRNA:   3'- -GCGCU---------UUGGUUaaauUGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 55456 0.69 0.968346
Target:  5'- gCGCGGugGGCCAGUcgucgcUUAACAcGUCCGGUc -3'
miRNA:   3'- -GCGCU--UUGGUUA------AAUUGU-CGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 38535 0.69 0.968346
Target:  5'- gCGCGc-GCCGGgc--ACAGCgCCGGCGc -3'
miRNA:   3'- -GCGCuuUGGUUaaauUGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 5146 0.69 0.968346
Target:  5'- uCGCGc-GCCu------CGGCCCGGCGg -3'
miRNA:   3'- -GCGCuuUGGuuaaauuGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 4935 0.69 0.968346
Target:  5'- cCGCGAGcGCCcgcgccGCGGCCCaGGCGc -3'
miRNA:   3'- -GCGCUU-UGGuuaaauUGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 45602 0.69 0.968346
Target:  5'- gGCGAucuACCAcaccGGCGGCgCGGCGc -3'
miRNA:   3'- gCGCUu--UGGUuaaaUUGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 20482 0.69 0.968346
Target:  5'- uGCGGAgcaaaGCCGAgcgcUGACAGCgggCCGGCu -3'
miRNA:   3'- gCGCUU-----UGGUUaa--AUUGUCG---GGCCGc -5'
23691 3' -49.7 NC_005261.1 + 74316 0.69 0.970523
Target:  5'- aCGCGAGACCGGgagAccgagaccgagaccGCAGgCgCGGCGg -3'
miRNA:   3'- -GCGCUUUGGUUaaaU--------------UGUCgG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 130857 0.69 0.971422
Target:  5'- gCGCGcccGGCCGGgcgccGCGGCCUGGCc -3'
miRNA:   3'- -GCGCu--UUGGUUaaau-UGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 32130 0.69 0.971422
Target:  5'- cCGCGccGCCAAccgcUGGgGGCUCGGCGc -3'
miRNA:   3'- -GCGCuuUGGUUaa--AUUgUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 120588 0.69 0.971422
Target:  5'- aGCGucguGGCCGucgccuGCGGCCuCGGCGc -3'
miRNA:   3'- gCGCu---UUGGUuaaau-UGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 118217 0.69 0.971422
Target:  5'- gCGCGggGCgc---UGACGGCCgCGGCc -3'
miRNA:   3'- -GCGCuuUGguuaaAUUGUCGG-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 108166 0.69 0.971422
Target:  5'- gCGCGuccGCCAGggcgcGCGGCCgCGGCu -3'
miRNA:   3'- -GCGCuu-UGGUUaaau-UGUCGG-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 92935 0.69 0.971422
Target:  5'- gGCGGAGCa------GCuGCCCGGCGu -3'
miRNA:   3'- gCGCUUUGguuaaauUGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 82865 0.69 0.971422
Target:  5'- aGCGAAGgCGGc--GACGGCgCUGGCGg -3'
miRNA:   3'- gCGCUUUgGUUaaaUUGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 49134 0.69 0.973161
Target:  5'- gGCGGGACCcccgcgcgcagguAUUUGuccgcaaagGCGGCCaCGGCGg -3'
miRNA:   3'- gCGCUUUGGu------------UAAAU---------UGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 70672 0.69 0.973724
Target:  5'- cCGCGGgccgcaccuccAGCCAGgcguccagcGCGGCCCGcGCGg -3'
miRNA:   3'- -GCGCU-----------UUGGUUaaau-----UGUCGGGC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.