Results 101 - 120 of 234 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23691 | 3' | -49.7 | NC_005261.1 | + | 125681 | 0.69 | 0.974278 |
Target: 5'- cCGCcGAAUgGGUUUGccggGCuuGGCCCGGCGa -3' miRNA: 3'- -GCGcUUUGgUUAAAU----UG--UCGGGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 33501 | 0.69 | 0.974278 |
Target: 5'- cCGCGAGcACCAGg--GGCGGCggCGGCa -3' miRNA: 3'- -GCGCUU-UGGUUaaaUUGUCGg-GCCGc -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 111468 | 0.69 | 0.974278 |
Target: 5'- gGCGAGGCCAAaa-GGCGGgCgGGUGa -3' miRNA: 3'- gCGCUUUGGUUaaaUUGUCgGgCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 13864 | 0.69 | 0.974278 |
Target: 5'- gGCGucGCCG-----GCGGCCCGGUc -3' miRNA: 3'- gCGCuuUGGUuaaauUGUCGGGCCGc -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 92244 | 0.69 | 0.974278 |
Target: 5'- gCGCGGAuggagGCCAGgaa---GGCCCGGUa -3' miRNA: 3'- -GCGCUU-----UGGUUaaauugUCGGGCCGc -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 37013 | 0.69 | 0.974278 |
Target: 5'- gCGCGggGCCAGUUU-GCGGg--GGCGg -3' miRNA: 3'- -GCGCuuUGGUUAAAuUGUCgggCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 90037 | 0.69 | 0.974551 |
Target: 5'- aGCGggGCUuccugcugccgGACAGCCagCGGCGc -3' miRNA: 3'- gCGCuuUGGuuaaa------UUGUCGG--GCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 86661 | 0.69 | 0.974551 |
Target: 5'- aGCuGAAcACCAuggcgcccacCAGCCCGGCGa -3' miRNA: 3'- gCG-CUU-UGGUuaaauu----GUCGGGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 110930 | 0.69 | 0.97692 |
Target: 5'- cCGCGcugggcACCGAgc--GCcGCCCGGCGg -3' miRNA: 3'- -GCGCuu----UGGUUaaauUGuCGGGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 115856 | 0.69 | 0.97692 |
Target: 5'- gCGCGGcccccGCCGA---GGCGcGCCCGGCa -3' miRNA: 3'- -GCGCUu----UGGUUaaaUUGU-CGGGCCGc -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 93577 | 0.69 | 0.97692 |
Target: 5'- gGCGGGACgCGAUc--GCGcGCUCGGCGa -3' miRNA: 3'- gCGCUUUG-GUUAaauUGU-CGGGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 55209 | 0.69 | 0.97692 |
Target: 5'- gCGCGGAuCCG-----GCGGCCCgaGGCGg -3' miRNA: 3'- -GCGCUUuGGUuaaauUGUCGGG--CCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 19395 | 0.69 | 0.97692 |
Target: 5'- aGCGggGCuCGGUgau-CGGCCCGuGUGc -3' miRNA: 3'- gCGCuuUG-GUUAaauuGUCGGGC-CGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 55678 | 0.69 | 0.97692 |
Target: 5'- gGCGAuuuucGGCCAGcacGGCGGCCaCGGCc -3' miRNA: 3'- gCGCU-----UUGGUUaaaUUGUCGG-GCCGc -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 117919 | 0.69 | 0.979122 |
Target: 5'- gCGCGGgaacgaaGGCCGGcu--GCGGCCCGuGCGc -3' miRNA: 3'- -GCGCU-------UUGGUUaaauUGUCGGGC-CGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 108646 | 0.69 | 0.979357 |
Target: 5'- cCGCGAAgGCCuccgc--CAGCCCcGGCGu -3' miRNA: 3'- -GCGCUU-UGGuuaaauuGUCGGG-CCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 65830 | 0.69 | 0.979357 |
Target: 5'- gCGCGAAGCUgcccgAGUgccgcgagUAGCGGuCCgCGGCGg -3' miRNA: 3'- -GCGCUUUGG-----UUAa-------AUUGUC-GG-GCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 17294 | 0.69 | 0.979357 |
Target: 5'- cCGaCGAGgcuauauacccgGCCGGggUcGCGGCCCGGCc -3' miRNA: 3'- -GC-GCUU------------UGGUUaaAuUGUCGGGCCGc -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 110226 | 0.68 | 0.980724 |
Target: 5'- gGCGAcGCCuccagcgugGGCGGCgCGGCGc -3' miRNA: 3'- gCGCUuUGGuuaaa----UUGUCGgGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 28442 | 0.68 | 0.981598 |
Target: 5'- cCGCGGccGGCCA---UGGCGucuCCCGGCGg -3' miRNA: 3'- -GCGCU--UUGGUuaaAUUGUc--GGGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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