miRNA display CGI


Results 81 - 100 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 137913 0.67 0.991432
Target:  5'- uCGCG-GGCCccgcgAGCgGGCCCGGCu -3'
miRNA:   3'- -GCGCuUUGGuuaaaUUG-UCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 48084 0.67 0.990946
Target:  5'- aGCGAGACCccgcagauGCAGC-CGGUGc -3'
miRNA:   3'- gCGCUUUGGuuaaau--UGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 97503 0.67 0.990567
Target:  5'- gCGcCGggGCCGccggaacGUUUcggcucgccgcgaucGGCGGCCCcGGCGg -3'
miRNA:   3'- -GC-GCuuUGGU-------UAAA---------------UUGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 70267 0.67 0.990176
Target:  5'- cCGCGAugAGCaCGAUguccaUGACGGCCCccgagGGCa -3'
miRNA:   3'- -GCGCU--UUG-GUUAa----AUUGUCGGG-----CCGc -5'
23691 3' -49.7 NC_005261.1 + 1575 0.67 0.990176
Target:  5'- gCGCGccGAGCCcccagcggUUGGCGGCgCGGUGg -3'
miRNA:   3'- -GCGC--UUUGGuua-----AAUUGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 122963 0.67 0.990176
Target:  5'- aGCGggGCCccacacACAgGCUCGGUGg -3'
miRNA:   3'- gCGCuuUGGuuaaauUGU-CGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 114313 0.67 0.990176
Target:  5'- aGCGAc-CCG-----GCAGUCCGGCGc -3'
miRNA:   3'- gCGCUuuGGUuaaauUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 126939 0.67 0.990176
Target:  5'- aGCGcgGCCAGg--GGC-GCCgGGCGc -3'
miRNA:   3'- gCGCuuUGGUUaaaUUGuCGGgCCGC- -5'
23691 3' -49.7 NC_005261.1 + 135039 0.67 0.990176
Target:  5'- gGCGAGGCCGAcgccugcGGCGGCagCGGCc -3'
miRNA:   3'- gCGCUUUGGUUaaa----UUGUCGg-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 3829 0.67 0.990176
Target:  5'- cCGCGGGcCCGGgcgcUGGCGGCagCGGCGc -3'
miRNA:   3'- -GCGCUUuGGUUaa--AUUGUCGg-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 123895 0.67 0.990176
Target:  5'- uCGCGGAagGCCGccgcuGUgggguGCGGCCCGaGCa -3'
miRNA:   3'- -GCGCUU--UGGU-----UAaau--UGUCGGGC-CGc -5'
23691 3' -49.7 NC_005261.1 + 97017 0.67 0.990176
Target:  5'- gGCG-GGCCGucg-GGCGcGCCCGGCc -3'
miRNA:   3'- gCGCuUUGGUuaaaUUGU-CGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 73811 0.68 0.988925
Target:  5'- gCGCaGAAGCCGcgcccgcgccUAGCCCGGCu -3'
miRNA:   3'- -GCG-CUUUGGUuaaauu----GUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 83305 0.68 0.988779
Target:  5'- gCGCGGggUCGu----GCAGCUCgGGCGg -3'
miRNA:   3'- -GCGCUuuGGUuaaauUGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 35694 0.68 0.988779
Target:  5'- gGCGAGccccgguggGCCGGgggcucggUGGCGGcCCCGGCc -3'
miRNA:   3'- gCGCUU---------UGGUUaa------AUUGUC-GGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 71578 0.68 0.988779
Target:  5'- cCGCGAgcucccguAGCCGAUcacgUAggcccgccgccGCGGCCCgGGCGc -3'
miRNA:   3'- -GCGCU--------UUGGUUAa---AU-----------UGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 135465 0.68 0.988779
Target:  5'- uGCGGGACCucgu--ACuGCgCGGCGa -3'
miRNA:   3'- gCGCUUUGGuuaaauUGuCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 74063 0.68 0.988482
Target:  5'- uGCGGcAGCUgcgcgacGCGGCCCGGCu -3'
miRNA:   3'- gCGCU-UUGGuuaaau-UGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 89826 0.68 0.987232
Target:  5'- cCGCGGcacuucgcGGCCGGgccgGAgGGCCgCGGCGu -3'
miRNA:   3'- -GCGCU--------UUGGUUaaa-UUgUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 75457 0.68 0.987232
Target:  5'- -aCGggGCCAGUUccaGGC-GCCgGGCGg -3'
miRNA:   3'- gcGCuuUGGUUAAa--UUGuCGGgCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.