miRNA display CGI


Results 61 - 80 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 35791 0.67 0.993564
Target:  5'- cCGCGGGcGCCAuggcgcggGACGGCCUGGa- -3'
miRNA:   3'- -GCGCUU-UGGUuaaa----UUGUCGGGCCgc -5'
23691 3' -49.7 NC_005261.1 + 35918 0.67 0.993372
Target:  5'- aGCGcgGCCccgcgccGCAGCCCaGCGg -3'
miRNA:   3'- gCGCuuUGGuuaaau-UGUCGGGcCGC- -5'
23691 3' -49.7 NC_005261.1 + 37013 0.69 0.974278
Target:  5'- gCGCGggGCCAGUUU-GCGGg--GGCGg -3'
miRNA:   3'- -GCGCuuUGGUUAAAuUGUCgggCCGC- -5'
23691 3' -49.7 NC_005261.1 + 37256 0.66 0.996986
Target:  5'- gCGCgGAGACCAuccuggccgAGCcguGCCgCGGCGa -3'
miRNA:   3'- -GCG-CUUUGGUuaaa-----UUGu--CGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 38535 0.69 0.968346
Target:  5'- gCGCGc-GCCGGgc--ACAGCgCCGGCGc -3'
miRNA:   3'- -GCGCuuUGGUUaaauUGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 38918 0.75 0.771688
Target:  5'- gCGCGGGcccgcgcGCCAAgccGGCGGCCgGGCGg -3'
miRNA:   3'- -GCGCUU-------UGGUUaaaUUGUCGGgCCGC- -5'
23691 3' -49.7 NC_005261.1 + 39377 0.72 0.89235
Target:  5'- gGCG--GCCGGggagGGCGGCCCuGGCGg -3'
miRNA:   3'- gCGCuuUGGUUaaa-UUGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 40251 0.73 0.85431
Target:  5'- cCGUGAGcGCCAuggcGGCGGCCgCGGCGg -3'
miRNA:   3'- -GCGCUU-UGGUuaaaUUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 40673 0.66 0.997087
Target:  5'- cCGCGAcGCCGucggggAGcCGGCgCCGGCc -3'
miRNA:   3'- -GCGCUuUGGUuaaa--UU-GUCG-GGCCGc -5'
23691 3' -49.7 NC_005261.1 + 42099 0.74 0.837499
Target:  5'- cCGCGGugaggauguGCCGGcccAGCAGCCCGGCc -3'
miRNA:   3'- -GCGCUu--------UGGUUaaaUUGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 42656 0.77 0.701107
Target:  5'- gCGCGGAACCAGccaagcGGCGGCCgGGCc -3'
miRNA:   3'- -GCGCUUUGGUUaaa---UUGUCGGgCCGc -5'
23691 3' -49.7 NC_005261.1 + 43298 0.74 0.828781
Target:  5'- cCGCGGGgggcGCCG-----GCAGCCCGGCc -3'
miRNA:   3'- -GCGCUU----UGGUuaaauUGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 43996 0.68 0.985526
Target:  5'- aCGUGGAcACCucc----CAGCCCGGCu -3'
miRNA:   3'- -GCGCUU-UGGuuaaauuGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 45602 0.69 0.968346
Target:  5'- gGCGAucuACCAcaccGGCGGCgCGGCGc -3'
miRNA:   3'- gCGCUu--UGGUuaaaUUGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 46320 0.66 0.99728
Target:  5'- cCGCGAGGCUGcgcUUGGCcaugcgcccaaacucGGUCCGGCa -3'
miRNA:   3'- -GCGCUUUGGUua-AAUUG---------------UCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 46472 0.7 0.961501
Target:  5'- -uCGAAGCgCAGgu--GCAGCUCGGCGc -3'
miRNA:   3'- gcGCUUUG-GUUaaauUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 46500 0.77 0.700053
Target:  5'- cCGCGggGC-------GCAGCCCGGCGu -3'
miRNA:   3'- -GCGCuuUGguuaaauUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 47126 0.66 0.994943
Target:  5'- gCGCGu--CCAGgucgucgcgcACAGCgCCGGCGu -3'
miRNA:   3'- -GCGCuuuGGUUaaau------UGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 47600 0.66 0.996776
Target:  5'- gCGCGAgggAGCCGcccccugcgggGGCGGCCgCGGCc -3'
miRNA:   3'- -GCGCU---UUGGUuaaa-------UUGUCGG-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 47697 0.66 0.996554
Target:  5'- cCGCGgcGCCGcgUcGGCGGCgUCGGgGg -3'
miRNA:   3'- -GCGCuuUGGUuaAaUUGUCG-GGCCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.