miRNA display CGI


Results 81 - 100 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 47733 0.68 0.981598
Target:  5'- gGCGGAcACCA-----GCAGCCCgcuGGCGu -3'
miRNA:   3'- gCGCUU-UGGUuaaauUGUCGGG---CCGC- -5'
23691 3' -49.7 NC_005261.1 + 48084 0.67 0.990946
Target:  5'- aGCGAGACCccgcagauGCAGC-CGGUGc -3'
miRNA:   3'- gCGCUUUGGuuaaau--UGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 48301 0.66 0.995944
Target:  5'- aGCGAGGCCucggggGGCgcgucgGGCCCGGg- -3'
miRNA:   3'- gCGCUUUGGuuaaa-UUG------UCGGGCCgc -5'
23691 3' -49.7 NC_005261.1 + 49134 0.69 0.973161
Target:  5'- gGCGGGACCcccgcgcgcagguAUUUGuccgcaaagGCGGCCaCGGCGg -3'
miRNA:   3'- gCGCUUUGGu------------UAAAU---------UGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 50400 0.68 0.981598
Target:  5'- uCGCGAAgGCCG-----GCAGCCCcGCGu -3'
miRNA:   3'- -GCGCUU-UGGUuaaauUGUCGGGcCGC- -5'
23691 3' -49.7 NC_005261.1 + 50423 0.68 0.983651
Target:  5'- uCGCGGAGCCGcucguGCAGCgUGcGCGu -3'
miRNA:   3'- -GCGCUUUGGUuaaauUGUCGgGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 50556 0.67 0.993564
Target:  5'- gCGCGcGGACCAcggucACGcGCCUGGCGu -3'
miRNA:   3'- -GCGC-UUUGGUuaaauUGU-CGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 50976 0.72 0.905845
Target:  5'- gCGCGAAACCucu----CGGCCgaCGGCGg -3'
miRNA:   3'- -GCGCUUUGGuuaaauuGUCGG--GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 52965 0.67 0.991432
Target:  5'- aGCGccgcGCCGGU---GCGGCgCCGGCa -3'
miRNA:   3'- gCGCuu--UGGUUAaauUGUCG-GGCCGc -5'
23691 3' -49.7 NC_005261.1 + 55053 0.7 0.965041
Target:  5'- gCGCGggGCCG-----GCgAGCUCGGCc -3'
miRNA:   3'- -GCGCuuUGGUuaaauUG-UCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 55209 0.69 0.97692
Target:  5'- gCGCGGAuCCG-----GCGGCCCgaGGCGg -3'
miRNA:   3'- -GCGCUUuGGUuaaauUGUCGGG--CCGC- -5'
23691 3' -49.7 NC_005261.1 + 55456 0.69 0.968346
Target:  5'- gCGCGGugGGCCAGUcgucgcUUAACAcGUCCGGUc -3'
miRNA:   3'- -GCGCU--UUGGUUA------AAUUGU-CGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 55678 0.69 0.97692
Target:  5'- gGCGAuuuucGGCCAGcacGGCGGCCaCGGCc -3'
miRNA:   3'- gCGCU-----UUGGUUaaaUUGUCGG-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 55939 0.71 0.929726
Target:  5'- gCGCGcAGCC-GUUUGGCucCCCGGCGc -3'
miRNA:   3'- -GCGCuUUGGuUAAAUUGucGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 56145 0.73 0.85431
Target:  5'- gCGCG-GGCCGAgggUGGCGGCagCGGCGg -3'
miRNA:   3'- -GCGCuUUGGUUaa-AUUGUCGg-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 56341 0.73 0.862387
Target:  5'- gCGcCGAGGCCGggUUAAauacCGGCaCCGGCGa -3'
miRNA:   3'- -GC-GCUUUGGUuaAAUU----GUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 57744 0.7 0.953694
Target:  5'- cCGCGuagGACCAcc---ACAcGCCCGGCGc -3'
miRNA:   3'- -GCGCu--UUGGUuaaauUGU-CGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 58344 0.66 0.996438
Target:  5'- uCGCGGAGCCGcgccggcCAGUCCaGGUGu -3'
miRNA:   3'- -GCGCUUUGGUuaaauu-GUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 59118 0.66 0.995878
Target:  5'- gCGCGAGcuccccgGCCAccgacuCAGgCCGGCGc -3'
miRNA:   3'- -GCGCUU-------UGGUuaaauuGUCgGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 59411 0.67 0.992343
Target:  5'- uCGcCGgcGCCGGcgcugucgcGCGGCCCGGCa -3'
miRNA:   3'- -GC-GCuuUGGUUaaau-----UGUCGGGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.