miRNA display CGI


Results 101 - 120 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 59463 0.73 0.85431
Target:  5'- cCGCGGcgUCGGgg-GGCAGCgCCGGCGc -3'
miRNA:   3'- -GCGCUuuGGUUaaaUUGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 59593 0.67 0.994287
Target:  5'- cCGCGccGCCAccaccuccGCGGCgCGGCGg -3'
miRNA:   3'- -GCGCuuUGGUuaaau---UGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 62865 0.7 0.953694
Target:  5'- aCGCGGcGGCCu-UUUAugcgcggcGCAGCCCGcGCGa -3'
miRNA:   3'- -GCGCU-UUGGuuAAAU--------UGUCGGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 65361 0.72 0.9159
Target:  5'- aCGCGggGCauggcccGCAcGCCCGGCa -3'
miRNA:   3'- -GCGCuuUGguuaaauUGU-CGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 65394 0.66 0.995944
Target:  5'- uGCG--GCgGGUUgGGCGGcCCCGGCa -3'
miRNA:   3'- gCGCuuUGgUUAAaUUGUC-GGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 65830 0.69 0.979357
Target:  5'- gCGCGAAGCUgcccgAGUgccgcgagUAGCGGuCCgCGGCGg -3'
miRNA:   3'- -GCGCUUUGG-----UUAa-------AUUGUC-GG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 66091 0.67 0.992559
Target:  5'- aUGCGcgGCCAcgUcaucCAGCCCGcGCa -3'
miRNA:   3'- -GCGCuuUGGUuaAauu-GUCGGGC-CGc -5'
23691 3' -49.7 NC_005261.1 + 67000 0.67 0.993469
Target:  5'- gCGCGGuggcaGGCCAccucgauGUUUGACAGgaCCUGGCc -3'
miRNA:   3'- -GCGCU-----UUGGU-------UAAAUUGUC--GGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 67887 0.67 0.993564
Target:  5'- gCGCGGGuaagcGCCGcAUUUAACccggcGCCCGGgGc -3'
miRNA:   3'- -GCGCUU-----UGGU-UAAAUUGu----CGGGCCgC- -5'
23691 3' -49.7 NC_005261.1 + 68241 0.66 0.996554
Target:  5'- gGCGggGgCGuguucgugGACuGCCUGGCGc -3'
miRNA:   3'- gCGCuuUgGUuaaa----UUGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 70267 0.67 0.990176
Target:  5'- cCGCGAugAGCaCGAUguccaUGACGGCCCccgagGGCa -3'
miRNA:   3'- -GCGCU--UUG-GUUAa----AUUGUCGGG-----CCGc -5'
23691 3' -49.7 NC_005261.1 + 70672 0.69 0.973724
Target:  5'- cCGCGGgccgcaccuccAGCCAGgcguccagcGCGGCCCGcGCGg -3'
miRNA:   3'- -GCGCU-----------UUGGUUaaau-----UGUCGGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 71421 0.67 0.993469
Target:  5'- gCGCGggGCC-------CGGCCCGGg- -3'
miRNA:   3'- -GCGCuuUGGuuaaauuGUCGGGCCgc -5'
23691 3' -49.7 NC_005261.1 + 71578 0.68 0.988779
Target:  5'- cCGCGAgcucccguAGCCGAUcacgUAggcccgccgccGCGGCCCgGGCGc -3'
miRNA:   3'- -GCGCU--------UUGGUUAa---AU-----------UGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 71778 0.69 0.968346
Target:  5'- cCGCGGcccgcucgcAGCUGAgc--GCGGCCCGGCc -3'
miRNA:   3'- -GCGCU---------UUGGUUaaauUGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 73370 0.66 0.996554
Target:  5'- gGCGgcGCCA-----GCAGCgCGGCc -3'
miRNA:   3'- gCGCuuUGGUuaaauUGUCGgGCCGc -5'
23691 3' -49.7 NC_005261.1 + 73811 0.68 0.988925
Target:  5'- gCGCaGAAGCCGcgcccgcgccUAGCCCGGCu -3'
miRNA:   3'- -GCG-CUUUGGUuaaauu----GUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 74063 0.68 0.988482
Target:  5'- uGCGGcAGCUgcgcgacGCGGCCCGGCu -3'
miRNA:   3'- gCGCU-UUGGuuaaau-UGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 74228 0.67 0.993564
Target:  5'- -uCGAGGCUA---UAAUAGCCgGGCGc -3'
miRNA:   3'- gcGCUUUGGUuaaAUUGUCGGgCCGC- -5'
23691 3' -49.7 NC_005261.1 + 74316 0.69 0.970523
Target:  5'- aCGCGAGACCGGgagAccgagaccgagaccGCAGgCgCGGCGg -3'
miRNA:   3'- -GCGCUUUGGUUaaaU--------------UGUCgG-GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.