miRNA display CGI


Results 121 - 140 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 74422 0.67 0.991432
Target:  5'- gGCGGgagGGCCGAggagAGCGccccCCCGGCGg -3'
miRNA:   3'- gCGCU---UUGGUUaaa-UUGUc---GGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 74715 0.71 0.93504
Target:  5'- gCGCGGAACCGGgcc-GCGGCagCGGCc -3'
miRNA:   3'- -GCGCUUUGGUUaaauUGUCGg-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 75194 0.7 0.953694
Target:  5'- uCGCG-GACCuucaUGGCGGCCgCGGUGg -3'
miRNA:   3'- -GCGCuUUGGuuaaAUUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 75329 0.66 0.99728
Target:  5'- gCGCGGAGCCcuguGaccuucgucggccucGUggAGCAGCugCCGGCGu -3'
miRNA:   3'- -GCGCUUUGG----U---------------UAaaUUGUCG--GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 75392 0.71 0.924719
Target:  5'- gCGCGc-GCCAucgacgagggcGCGGCCCGGCGc -3'
miRNA:   3'- -GCGCuuUGGUuaaau------UGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 75457 0.68 0.987232
Target:  5'- -aCGggGCCAGUUccaGGC-GCCgGGCGg -3'
miRNA:   3'- gcGCuuUGGUUAAa--UUGuCGGgCCGC- -5'
23691 3' -49.7 NC_005261.1 + 75852 0.71 0.93504
Target:  5'- gCGCGgcGCCGAc--GGCGGCCCcgacGGCGc -3'
miRNA:   3'- -GCGCuuUGGUUaaaUUGUCGGG----CCGC- -5'
23691 3' -49.7 NC_005261.1 + 76859 0.68 0.983651
Target:  5'- uCGCGccGCC----UGGC-GCCCGGCGa -3'
miRNA:   3'- -GCGCuuUGGuuaaAUUGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 77031 0.7 0.953694
Target:  5'- aCGcCGAGGCCGcgcgcGCGGCCCucGGCGa -3'
miRNA:   3'- -GC-GCUUUGGUuaaauUGUCGGG--CCGC- -5'
23691 3' -49.7 NC_005261.1 + 77235 0.66 0.995247
Target:  5'- --aGGAGCCAGagc-GCAGCCgGGCu -3'
miRNA:   3'- gcgCUUUGGUUaaauUGUCGGgCCGc -5'
23691 3' -49.7 NC_005261.1 + 79141 0.7 0.957721
Target:  5'- gGCG--GCCAc-----CAGCCCGGCGa -3'
miRNA:   3'- gCGCuuUGGUuaaauuGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 80106 0.66 0.996554
Target:  5'- cCGCGguACCGGcUUGggcgccGCGGCagCGGCGg -3'
miRNA:   3'- -GCGCuuUGGUUaAAU------UGUCGg-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 81211 0.67 0.991432
Target:  5'- gCGCGAgccgGACCAccgUGGC-GCCCgagGGCGg -3'
miRNA:   3'- -GCGCU----UUGGUuaaAUUGuCGGG---CCGC- -5'
23691 3' -49.7 NC_005261.1 + 81788 0.66 0.996554
Target:  5'- uCGCGGAuauauuGCCAAgcgAGCcgcuGCgCGGCGg -3'
miRNA:   3'- -GCGCUU------UGGUUaaaUUGu---CGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 82001 0.66 0.995944
Target:  5'- gCGCGcuGCCGucgaagAGCGGCCCGuuGa -3'
miRNA:   3'- -GCGCuuUGGUuaaa--UUGUCGGGCcgC- -5'
23691 3' -49.7 NC_005261.1 + 82865 0.69 0.971422
Target:  5'- aGCGAAGgCGGc--GACGGCgCUGGCGg -3'
miRNA:   3'- gCGCUUUgGUUaaaUUGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 83305 0.68 0.988779
Target:  5'- gCGCGGggUCGu----GCAGCUCgGGCGg -3'
miRNA:   3'- -GCGCUuuGGUuaaauUGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 84994 0.66 0.997087
Target:  5'- gGCGcacCCAGUgcaUGACGGCCgCGGgGu -3'
miRNA:   3'- gCGCuuuGGUUAa--AUUGUCGG-GCCgC- -5'
23691 3' -49.7 NC_005261.1 + 86340 0.67 0.994457
Target:  5'- gCGCGu--CCAugucguuGC-GCCCGGCGa -3'
miRNA:   3'- -GCGCuuuGGUuaaau--UGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 86661 0.69 0.974551
Target:  5'- aGCuGAAcACCAuggcgcccacCAGCCCGGCGa -3'
miRNA:   3'- gCG-CUU-UGGUuaaauu----GUCGGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.