miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 115856 0.69 0.97692
Target:  5'- gCGCGGcccccGCCGA---GGCGcGCCCGGCa -3'
miRNA:   3'- -GCGCUu----UGGUUaaaUUGU-CGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 115613 0.66 0.996554
Target:  5'- aGCGAGGCCAGcacgucgcGGCAGCgCaGCGu -3'
miRNA:   3'- gCGCUUUGGUUaaa-----UUGUCGgGcCGC- -5'
23691 3' -49.7 NC_005261.1 + 115418 0.7 0.957721
Target:  5'- gGCGGcAGCCGGggccGCGGCCCGaGCu -3'
miRNA:   3'- gCGCU-UUGGUUaaauUGUCGGGC-CGc -5'
23691 3' -49.7 NC_005261.1 + 114313 0.67 0.990176
Target:  5'- aGCGAc-CCG-----GCAGUCCGGCGc -3'
miRNA:   3'- gCGCUuuGGUuaaauUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 113909 0.69 0.968346
Target:  5'- gCGCGAuGGCCGAggcAGCGGgCgCGGCGa -3'
miRNA:   3'- -GCGCU-UUGGUUaaaUUGUCgG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 113526 0.7 0.949416
Target:  5'- gCGCGAGGCCAGc----CGGCUCGGgGc -3'
miRNA:   3'- -GCGCUUUGGUUaaauuGUCGGGCCgC- -5'
23691 3' -49.7 NC_005261.1 + 112625 0.67 0.992559
Target:  5'- uCGCaccucAGCCGGcUgcACGGCCCGGCc -3'
miRNA:   3'- -GCGcu---UUGGUUaAauUGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 111468 0.69 0.974278
Target:  5'- gGCGAGGCCAAaa-GGCGGgCgGGUGa -3'
miRNA:   3'- gCGCUUUGGUUaaaUUGUCgGgCCGC- -5'
23691 3' -49.7 NC_005261.1 + 110930 0.69 0.97692
Target:  5'- cCGCGcugggcACCGAgc--GCcGCCCGGCGg -3'
miRNA:   3'- -GCGCuu----UGGUUaaauUGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 110226 0.68 0.980724
Target:  5'- gGCGAcGCCuccagcgugGGCGGCgCGGCGc -3'
miRNA:   3'- gCGCUuUGGuuaaa----UUGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 109256 0.67 0.994541
Target:  5'- uGCGggGCCAcgaaguccagcgAGCugAGCCCGGaCGc -3'
miRNA:   3'- gCGCuuUGGUuaaa--------UUG--UCGGGCC-GC- -5'
23691 3' -49.7 NC_005261.1 + 108646 0.69 0.979357
Target:  5'- cCGCGAAgGCCuccgc--CAGCCCcGGCGu -3'
miRNA:   3'- -GCGCUU-UGGuuaaauuGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 108222 0.68 0.985526
Target:  5'- gCGCGcu-CCAGcaUGGCGcacguGCCCGGCGu -3'
miRNA:   3'- -GCGCuuuGGUUaaAUUGU-----CGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 108166 0.69 0.971422
Target:  5'- gCGCGuccGCCAGggcgcGCGGCCgCGGCu -3'
miRNA:   3'- -GCGCuu-UGGUUaaau-UGUCGG-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 107966 0.66 0.995944
Target:  5'- cCGCGggGCCAu----GCAGU--GGCGg -3'
miRNA:   3'- -GCGCuuUGGUuaaauUGUCGggCCGC- -5'
23691 3' -49.7 NC_005261.1 + 106725 0.67 0.993564
Target:  5'- aGCGGcccACCucgu--GCAGCCCcGGCGc -3'
miRNA:   3'- gCGCUu--UGGuuaaauUGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 106625 0.77 0.658572
Target:  5'- cCGCGGAGCCGcgc-GACgAGCUCGGCGa -3'
miRNA:   3'- -GCGCUUUGGUuaaaUUG-UCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 106080 0.67 0.993275
Target:  5'- uGCGGAACCccac-AGCGGCgaucgcgacgucggCCGGCGu -3'
miRNA:   3'- gCGCUUUGGuuaaaUUGUCG--------------GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 105945 0.7 0.965041
Target:  5'- cCGCGAGcgcGCCGuc--GAUGGCCuCGGCGc -3'
miRNA:   3'- -GCGCUU---UGGUuaaaUUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 105262 0.68 0.983651
Target:  5'- gCGCGAcaGGCuCGGcgggcGGCAGCgCCGGCGa -3'
miRNA:   3'- -GCGCU--UUG-GUUaaa--UUGUCG-GGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.