miRNA display CGI


Results 61 - 80 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 104532 0.67 0.991432
Target:  5'- gGCGGccgccACCAGgc--GCAGCuuGGCGu -3'
miRNA:   3'- gCGCUu----UGGUUaaauUGUCGggCCGC- -5'
23691 3' -49.7 NC_005261.1 + 103678 0.72 0.890238
Target:  5'- cCGCGAGGCCGAgcgcccguuuaUAGCGGCCacgucacccagcaCGGCGu -3'
miRNA:   3'- -GCGCUUUGGUUaa---------AUUGUCGG-------------GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 103086 0.76 0.711606
Target:  5'- cCGCGAAgGCCGGgcc--CAGCCCGGCc -3'
miRNA:   3'- -GCGCUU-UGGUUaaauuGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 102546 0.67 0.992559
Target:  5'- uGCGGccCCAG----GC-GCCCGGCGg -3'
miRNA:   3'- gCGCUuuGGUUaaauUGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 102299 0.67 0.991432
Target:  5'- cCGCGGgucguAGCCGcgcgccGCGGCCgCGGCGc -3'
miRNA:   3'- -GCGCU-----UUGGUuaaau-UGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 101488 0.66 0.996554
Target:  5'- aUGCGcAGCagguucuugaGGUUggcCAGCCCGGCGc -3'
miRNA:   3'- -GCGCuUUGg---------UUAAauuGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 101363 0.66 0.995247
Target:  5'- cCGCG--GCCAcgUc--CAGCuCCGGCGc -3'
miRNA:   3'- -GCGCuuUGGUuaAauuGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 100684 0.72 0.89235
Target:  5'- gCGCGAGugCAcc---GCGGCCgCGGCGc -3'
miRNA:   3'- -GCGCUUugGUuaaauUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 98270 0.66 0.995247
Target:  5'- gGCGgcGCgCGcgUUcGAC-GCCCGGCGc -3'
miRNA:   3'- gCGCuuUG-GUuaAA-UUGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 98232 0.76 0.752755
Target:  5'- gGCGGGcAUCGAUUUccGCGGCCCGGUGc -3'
miRNA:   3'- gCGCUU-UGGUUAAAu-UGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 98116 0.74 0.828781
Target:  5'- gGCGAGGCUGGggacgccGCGGCaCCGGCGg -3'
miRNA:   3'- gCGCUUUGGUUaaau---UGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 97503 0.67 0.990567
Target:  5'- gCGcCGggGCCGccggaacGUUUcggcucgccgcgaucGGCGGCCCcGGCGg -3'
miRNA:   3'- -GC-GCuuUGGU-------UAAA---------------UUGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 97017 0.67 0.990176
Target:  5'- gGCG-GGCCGucg-GGCGcGCCCGGCc -3'
miRNA:   3'- gCGCuUUGGUuaaaUUGU-CGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 96959 0.67 0.994457
Target:  5'- gGCGggGCagccgccgggcgCGAUUcacGCGGCCuCGGCGc -3'
miRNA:   3'- gCGCuuUG------------GUUAAau-UGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 96073 0.69 0.968346
Target:  5'- aCGCccGAgCAGgugaguGCGGCCCGGCGc -3'
miRNA:   3'- -GCGcuUUgGUUaaau--UGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 95626 0.71 0.92415
Target:  5'- gCGCGGu-CCAGg--AGCGGCUgGGCGa -3'
miRNA:   3'- -GCGCUuuGGUUaaaUUGUCGGgCCGC- -5'
23691 3' -49.7 NC_005261.1 + 94240 0.66 0.995944
Target:  5'- gGCGGcGACCAc---GAUGGCCaCGGCGc -3'
miRNA:   3'- gCGCU-UUGGUuaaaUUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 94026 0.72 0.899225
Target:  5'- aGCGc-ACCuucucGGCGGCCCGGCGc -3'
miRNA:   3'- gCGCuuUGGuuaaaUUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 93646 0.69 0.967379
Target:  5'- gCGCGAGguccgcguacgcccACCGGUccgcgggcGGCGGCgCCGGCGg -3'
miRNA:   3'- -GCGCUU--------------UGGUUAaa------UUGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 93577 0.69 0.97692
Target:  5'- gGCGGGACgCGAUc--GCGcGCUCGGCGa -3'
miRNA:   3'- gCGCUUUG-GUUAaauUGU-CGGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.