miRNA display CGI


Results 81 - 100 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 93512 0.68 0.985526
Target:  5'- cCGCGgcGCCGugUUGGCcgcgaggaAGCCCGcGCGc -3'
miRNA:   3'- -GCGCuuUGGUuaAAUUG--------UCGGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 92935 0.69 0.971422
Target:  5'- gGCGGAGCa------GCuGCCCGGCGu -3'
miRNA:   3'- gCGCUUUGguuaaauUGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 92244 0.69 0.974278
Target:  5'- gCGCGGAuggagGCCAGgaa---GGCCCGGUa -3'
miRNA:   3'- -GCGCUU-----UGGUUaaauugUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 91135 0.7 0.963654
Target:  5'- gGcCGAGGCCucagccguGCcGCCCGGCGa -3'
miRNA:   3'- gC-GCUUUGGuuaaau--UGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 90775 0.67 0.993564
Target:  5'- cCGcCGAGGCCGcu---GCGGCggCCGGCGc -3'
miRNA:   3'- -GC-GCUUUGGUuaaauUGUCG--GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 90384 0.71 0.926412
Target:  5'- gGCGAGGCCccgccggcggGGCuggcGCCCGGCGc -3'
miRNA:   3'- gCGCUUUGGuuaaa-----UUGu---CGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 90073 0.66 0.995944
Target:  5'- cCGCGGGcGCCGAg--GGCAGCgaCGGgGg -3'
miRNA:   3'- -GCGCUU-UGGUUaaaUUGUCGg-GCCgC- -5'
23691 3' -49.7 NC_005261.1 + 90037 0.69 0.974551
Target:  5'- aGCGggGCUuccugcugccgGACAGCCagCGGCGc -3'
miRNA:   3'- gCGCuuUGGuuaaa------UUGUCGG--GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 89826 0.68 0.987232
Target:  5'- cCGCGGcacuucgcGGCCGGgccgGAgGGCCgCGGCGu -3'
miRNA:   3'- -GCGCU--------UUGGUUaaa-UUgUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 88820 0.7 0.965382
Target:  5'- gGCGggGCgGcggcgcgcgcCGGCCCGGCGu -3'
miRNA:   3'- gCGCuuUGgUuaaauu----GUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 88590 0.71 0.923577
Target:  5'- cCGcCGAGGCC-------CGGCCCGGCGg -3'
miRNA:   3'- -GC-GCUUUGGuuaaauuGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 88181 0.72 0.89235
Target:  5'- gGCGAcGCCG-----GCGGCgCCGGCGa -3'
miRNA:   3'- gCGCUuUGGUuaaauUGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 87632 0.67 0.991432
Target:  5'- gCGCGAAcgccGCCuccacgGugAGCCCGcGCa -3'
miRNA:   3'- -GCGCUU----UGGuuaaa-UugUCGGGC-CGc -5'
23691 3' -49.7 NC_005261.1 + 86963 0.66 0.996554
Target:  5'- cCGUGAAGCaCAcgUccGGCGGCagcaCGGCGc -3'
miRNA:   3'- -GCGCUUUG-GUuaAa-UUGUCGg---GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 86661 0.69 0.974551
Target:  5'- aGCuGAAcACCAuggcgcccacCAGCCCGGCGa -3'
miRNA:   3'- gCG-CUU-UGGUuaaauu----GUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 86340 0.67 0.994457
Target:  5'- gCGCGu--CCAugucguuGC-GCCCGGCGa -3'
miRNA:   3'- -GCGCuuuGGUuaaau--UGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 84994 0.66 0.997087
Target:  5'- gGCGcacCCAGUgcaUGACGGCCgCGGgGu -3'
miRNA:   3'- gCGCuuuGGUUAa--AUUGUCGG-GCCgC- -5'
23691 3' -49.7 NC_005261.1 + 83305 0.68 0.988779
Target:  5'- gCGCGGggUCGu----GCAGCUCgGGCGg -3'
miRNA:   3'- -GCGCUuuGGUuaaauUGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 82865 0.69 0.971422
Target:  5'- aGCGAAGgCGGc--GACGGCgCUGGCGg -3'
miRNA:   3'- gCGCUUUgGUUaaaUUGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 82001 0.66 0.995944
Target:  5'- gCGCGcuGCCGucgaagAGCGGCCCGuuGa -3'
miRNA:   3'- -GCGCuuUGGUuaaa--UUGUCGGGCcgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.