Results 101 - 120 of 234 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23691 | 3' | -49.7 | NC_005261.1 | + | 81788 | 0.66 | 0.996554 |
Target: 5'- uCGCGGAuauauuGCCAAgcgAGCcgcuGCgCGGCGg -3' miRNA: 3'- -GCGCUU------UGGUUaaaUUGu---CGgGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 81211 | 0.67 | 0.991432 |
Target: 5'- gCGCGAgccgGACCAccgUGGC-GCCCgagGGCGg -3' miRNA: 3'- -GCGCU----UUGGUuaaAUUGuCGGG---CCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 80106 | 0.66 | 0.996554 |
Target: 5'- cCGCGguACCGGcUUGggcgccGCGGCagCGGCGg -3' miRNA: 3'- -GCGCuuUGGUUaAAU------UGUCGg-GCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 79141 | 0.7 | 0.957721 |
Target: 5'- gGCG--GCCAc-----CAGCCCGGCGa -3' miRNA: 3'- gCGCuuUGGUuaaauuGUCGGGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 77235 | 0.66 | 0.995247 |
Target: 5'- --aGGAGCCAGagc-GCAGCCgGGCu -3' miRNA: 3'- gcgCUUUGGUUaaauUGUCGGgCCGc -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 77031 | 0.7 | 0.953694 |
Target: 5'- aCGcCGAGGCCGcgcgcGCGGCCCucGGCGa -3' miRNA: 3'- -GC-GCUUUGGUuaaauUGUCGGG--CCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 76859 | 0.68 | 0.983651 |
Target: 5'- uCGCGccGCC----UGGC-GCCCGGCGa -3' miRNA: 3'- -GCGCuuUGGuuaaAUUGuCGGGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 75852 | 0.71 | 0.93504 |
Target: 5'- gCGCGgcGCCGAc--GGCGGCCCcgacGGCGc -3' miRNA: 3'- -GCGCuuUGGUUaaaUUGUCGGG----CCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 75457 | 0.68 | 0.987232 |
Target: 5'- -aCGggGCCAGUUccaGGC-GCCgGGCGg -3' miRNA: 3'- gcGCuuUGGUUAAa--UUGuCGGgCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 75392 | 0.71 | 0.924719 |
Target: 5'- gCGCGc-GCCAucgacgagggcGCGGCCCGGCGc -3' miRNA: 3'- -GCGCuuUGGUuaaau------UGUCGGGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 75329 | 0.66 | 0.99728 |
Target: 5'- gCGCGGAGCCcuguGaccuucgucggccucGUggAGCAGCugCCGGCGu -3' miRNA: 3'- -GCGCUUUGG----U---------------UAaaUUGUCG--GGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 75194 | 0.7 | 0.953694 |
Target: 5'- uCGCG-GACCuucaUGGCGGCCgCGGUGg -3' miRNA: 3'- -GCGCuUUGGuuaaAUUGUCGG-GCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 74715 | 0.71 | 0.93504 |
Target: 5'- gCGCGGAACCGGgcc-GCGGCagCGGCc -3' miRNA: 3'- -GCGCUUUGGUUaaauUGUCGg-GCCGc -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 74422 | 0.67 | 0.991432 |
Target: 5'- gGCGGgagGGCCGAggagAGCGccccCCCGGCGg -3' miRNA: 3'- gCGCU---UUGGUUaaa-UUGUc---GGGCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 74316 | 0.69 | 0.970523 |
Target: 5'- aCGCGAGACCGGgagAccgagaccgagaccGCAGgCgCGGCGg -3' miRNA: 3'- -GCGCUUUGGUUaaaU--------------UGUCgG-GCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 74228 | 0.67 | 0.993564 |
Target: 5'- -uCGAGGCUA---UAAUAGCCgGGCGc -3' miRNA: 3'- gcGCUUUGGUuaaAUUGUCGGgCCGC- -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 74063 | 0.68 | 0.988482 |
Target: 5'- uGCGGcAGCUgcgcgacGCGGCCCGGCu -3' miRNA: 3'- gCGCU-UUGGuuaaau-UGUCGGGCCGc -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 73811 | 0.68 | 0.988925 |
Target: 5'- gCGCaGAAGCCGcgcccgcgccUAGCCCGGCu -3' miRNA: 3'- -GCG-CUUUGGUuaaauu----GUCGGGCCGc -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 73370 | 0.66 | 0.996554 |
Target: 5'- gGCGgcGCCA-----GCAGCgCGGCc -3' miRNA: 3'- gCGCuuUGGUuaaauUGUCGgGCCGc -5' |
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23691 | 3' | -49.7 | NC_005261.1 | + | 71778 | 0.69 | 0.968346 |
Target: 5'- cCGCGGcccgcucgcAGCUGAgc--GCGGCCCGGCc -3' miRNA: 3'- -GCGCU---------UUGGUUaaauUGUCGGGCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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