miRNA display CGI


Results 121 - 140 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 12575 0.7 0.957721
Target:  5'- aCGCGggGCCGAgaggGGC-GCCUaGCGg -3'
miRNA:   3'- -GCGCuuUGGUUaaa-UUGuCGGGcCGC- -5'
23691 3' -49.7 NC_005261.1 + 115418 0.7 0.957721
Target:  5'- gGCGGcAGCCGGggccGCGGCCCGaGCu -3'
miRNA:   3'- gCGCU-UUGGUUaaauUGUCGGGC-CGc -5'
23691 3' -49.7 NC_005261.1 + 7963 0.71 0.940092
Target:  5'- gGUGGGcaaaucgaucGCCGA---GGCGGCCCGGUGg -3'
miRNA:   3'- gCGCUU----------UGGUUaaaUUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 132594 0.71 0.939598
Target:  5'- cCGCGGAcGCC-------CGGCCCGGCGa -3'
miRNA:   3'- -GCGCUU-UGGuuaaauuGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 75852 0.71 0.93504
Target:  5'- gCGCGgcGCCGAc--GGCGGCCCcgacGGCGc -3'
miRNA:   3'- -GCGCuuUGGUUaaaUUGUCGGG----CCGC- -5'
23691 3' -49.7 NC_005261.1 + 134937 0.72 0.89235
Target:  5'- cCGCGGAggacgaGCCGAUgggcGAgGGCgCCGGCGa -3'
miRNA:   3'- -GCGCUU------UGGUUAaa--UUgUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 94026 0.72 0.899225
Target:  5'- aGCGc-ACCuucucGGCGGCCCGGCGc -3'
miRNA:   3'- gCGCuuUGGuuaaaUUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 137092 0.72 0.899225
Target:  5'- gCGCaGGAGCUAGUgggAGCGGaCCCGcGCGg -3'
miRNA:   3'- -GCG-CUUUGGUUAaa-UUGUC-GGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 23225 0.72 0.905845
Target:  5'- gCGCGcaaAAGCCGGUgcAGCGGgCCGGCc -3'
miRNA:   3'- -GCGC---UUUGGUUAaaUUGUCgGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 50976 0.72 0.905845
Target:  5'- gCGCGAAACCucu----CGGCCgaCGGCGg -3'
miRNA:   3'- -GCGCUUUGGuuaaauuGUCGG--GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 13434 0.72 0.912208
Target:  5'- gCGCGucGACCGGgugcaGGCAGgCCGGCGc -3'
miRNA:   3'- -GCGCu-UUGGUUaaa--UUGUCgGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 65361 0.72 0.9159
Target:  5'- aCGCGggGCauggcccGCAcGCCCGGCa -3'
miRNA:   3'- -GCGCuuUGguuaaauUGU-CGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 88590 0.71 0.923577
Target:  5'- cCGcCGAGGCC-------CGGCCCGGCGg -3'
miRNA:   3'- -GC-GCUUUGGuuaaauuGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 95626 0.71 0.92415
Target:  5'- gCGCGGu-CCAGg--AGCGGCUgGGCGa -3'
miRNA:   3'- -GCGCUuuGGUUaaaUUGUCGGgCCGC- -5'
23691 3' -49.7 NC_005261.1 + 128433 0.71 0.92415
Target:  5'- cCGCGc-ACCAuggcgAACAGCgCGGCGg -3'
miRNA:   3'- -GCGCuuUGGUuaaa-UUGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 75392 0.71 0.924719
Target:  5'- gCGCGc-GCCAucgacgagggcGCGGCCCGGCGc -3'
miRNA:   3'- -GCGCuuUGGUuaaau------UGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 90384 0.71 0.926412
Target:  5'- gGCGAGGCCccgccggcggGGCuggcGCCCGGCGc -3'
miRNA:   3'- gCGCUUUGGuuaaa-----UUGu---CGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 55939 0.71 0.929726
Target:  5'- gCGCGcAGCC-GUUUGGCucCCCGGCGc -3'
miRNA:   3'- -GCGCuUUGGuUAAAUUGucGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 29299 0.71 0.93504
Target:  5'- gGCGAGGCCu-------GGCCCGGCa -3'
miRNA:   3'- gCGCUUUGGuuaaauugUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 74715 0.71 0.93504
Target:  5'- gCGCGGAACCGGgcc-GCGGCagCGGCc -3'
miRNA:   3'- -GCGCUUUGGUUaaauUGUCGg-GCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.