miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23692 3' -51.8 NC_005261.1 + 71765 0.66 0.987915
Target:  5'- aCCUccAGCCGGACCgc--GGCCCGc- -3'
miRNA:   3'- -GGGauUUGGUCUGGaacuUCGGGCuc -5'
23692 3' -51.8 NC_005261.1 + 125833 0.7 0.897965
Target:  5'- gCC-GGACCGGGCUUUGcAAGCCCa-- -3'
miRNA:   3'- gGGaUUUGGUCUGGAAC-UUCGGGcuc -5'
23692 3' -51.8 NC_005261.1 + 34303 0.69 0.916892
Target:  5'- gCCggGAGCgAGACCgacggGGAGgCCGAGg -3'
miRNA:   3'- gGGa-UUUGgUCUGGaa---CUUCgGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 22700 0.69 0.922697
Target:  5'- gCCCggcGACgAGGCCgucgaGGAGCCgGAGg -3'
miRNA:   3'- -GGGau-UUGgUCUGGaa---CUUCGGgCUC- -5'
23692 3' -51.8 NC_005261.1 + 121192 0.69 0.922697
Target:  5'- gCCgGGGCCGGGCCc-GggGCCgCGGGc -3'
miRNA:   3'- gGGaUUUGGUCUGGaaCuuCGG-GCUC- -5'
23692 3' -51.8 NC_005261.1 + 61494 0.69 0.928248
Target:  5'- aCCUGAccgagagcaccGCCGGcCCcggcGAGGCCCGGGc -3'
miRNA:   3'- gGGAUU-----------UGGUCuGGaa--CUUCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 125902 0.68 0.947919
Target:  5'- gCCUGAGCCAGAUgUguggcGggGCUCGc- -3'
miRNA:   3'- gGGAUUUGGUCUGgAa----CuuCGGGCuc -5'
23692 3' -51.8 NC_005261.1 + 60397 0.68 0.947919
Target:  5'- gCCUccauggcGCCGGGCCggcccGGGCCCGGGg -3'
miRNA:   3'- gGGAuu-----UGGUCUGGaac--UUCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 22646 0.68 0.955866
Target:  5'- uCCCUAGACgcgcuggCGGcGCCUgggcGgcGCCCGAGu -3'
miRNA:   3'- -GGGAUUUG-------GUC-UGGAa---CuuCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 118361 0.7 0.897965
Target:  5'- cCUCUcgGCCGGGCgCUggGGcgcgcGGCCCGAGg -3'
miRNA:   3'- -GGGAuuUGGUCUG-GAa-CU-----UCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 15915 0.7 0.89116
Target:  5'- cCCCgcgcAGCCgGGGCCggggccGggGCCCGGGc -3'
miRNA:   3'- -GGGau--UUGG-UCUGGaa----CuuCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 78153 0.71 0.869313
Target:  5'- gCCCgccgcuGCCGGcgggccACCUgaGGAGCCCGGGg -3'
miRNA:   3'- -GGGauu---UGGUC------UGGAa-CUUCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 30763 0.77 0.52547
Target:  5'- gCCCUAGuCCGGGCC--GGAGCCCGGc -3'
miRNA:   3'- -GGGAUUuGGUCUGGaaCUUCGGGCUc -5'
23692 3' -51.8 NC_005261.1 + 30719 0.77 0.535656
Target:  5'- cCCCggcGCCGGGCCgccAGGCCCGAGc -3'
miRNA:   3'- -GGGauuUGGUCUGGaacUUCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 28954 0.76 0.587481
Target:  5'- gCCgAAGCCAGGCCc--AAGCCCGAGc -3'
miRNA:   3'- gGGaUUUGGUCUGGaacUUCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 81214 0.76 0.608501
Target:  5'- ---cGAGCCGGACCaccgUGgcGCCCGAGg -3'
miRNA:   3'- gggaUUUGGUCUGGa---ACuuCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 30943 0.73 0.773306
Target:  5'- cCCCUcgGGGgCGGGCCUcGAGGCCCGc- -3'
miRNA:   3'- -GGGA--UUUgGUCUGGAaCUUCGGGCuc -5'
23692 3' -51.8 NC_005261.1 + 1232 0.72 0.80162
Target:  5'- gCCgucGCCGGcCCcggGAAGCCCGAGu -3'
miRNA:   3'- gGGauuUGGUCuGGaa-CUUCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 37647 0.72 0.819696
Target:  5'- cCCCcAAGCCcuuGGCCUUGGccCCCGAGc -3'
miRNA:   3'- -GGGaUUUGGu--CUGGAACUucGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 92764 0.71 0.84543
Target:  5'- gCCgcucGGACCGGGCC---GAGCCCGGGc -3'
miRNA:   3'- gGGa---UUUGGUCUGGaacUUCGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.