Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23692 | 3' | -51.8 | NC_005261.1 | + | 16266 | 0.68 | 0.95626 |
Target: 5'- gCCgGGGCCGGGCUUcGGcucGCCCGGGg -3' miRNA: 3'- gGGaUUUGGUCUGGAaCUu--CGGGCUC- -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 22646 | 0.68 | 0.955866 |
Target: 5'- uCCCUAGACgcgcuggCGGcGCCUgggcGgcGCCCGAGu -3' miRNA: 3'- -GGGAUUUG-------GUC-UGGAa---CuuCGGGCUC- -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 60397 | 0.68 | 0.947919 |
Target: 5'- gCCUccauggcGCCGGGCCggcccGGGCCCGGGg -3' miRNA: 3'- gGGAuu-----UGGUCUGGaac--UUCGGGCUC- -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 125902 | 0.68 | 0.947919 |
Target: 5'- gCCUGAGCCAGAUgUguggcGggGCUCGc- -3' miRNA: 3'- gGGAUUUGGUCUGgAa----CuuCGGGCuc -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 61494 | 0.69 | 0.928248 |
Target: 5'- aCCUGAccgagagcaccGCCGGcCCcggcGAGGCCCGGGc -3' miRNA: 3'- gGGAUU-----------UGGUCuGGaa--CUUCGGGCUC- -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 22700 | 0.69 | 0.922697 |
Target: 5'- gCCCggcGACgAGGCCgucgaGGAGCCgGAGg -3' miRNA: 3'- -GGGau-UUGgUCUGGaa---CUUCGGgCUC- -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 121192 | 0.69 | 0.922697 |
Target: 5'- gCCgGGGCCGGGCCc-GggGCCgCGGGc -3' miRNA: 3'- gGGaUUUGGUCUGGaaCuuCGG-GCUC- -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 34303 | 0.69 | 0.916892 |
Target: 5'- gCCggGAGCgAGACCgacggGGAGgCCGAGg -3' miRNA: 3'- gGGa-UUUGgUCUGGaa---CUUCgGGCUC- -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 125833 | 0.7 | 0.897965 |
Target: 5'- gCC-GGACCGGGCUUUGcAAGCCCa-- -3' miRNA: 3'- gGGaUUUGGUCUGGAAC-UUCGGGcuc -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 118361 | 0.7 | 0.897965 |
Target: 5'- cCUCUcgGCCGGGCgCUggGGcgcgcGGCCCGAGg -3' miRNA: 3'- -GGGAuuUGGUCUG-GAa-CU-----UCGGGCUC- -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 15915 | 0.7 | 0.89116 |
Target: 5'- cCCCgcgcAGCCgGGGCCggggccGggGCCCGGGc -3' miRNA: 3'- -GGGau--UUGG-UCUGGaa----CuuCGGGCUC- -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 78153 | 0.71 | 0.869313 |
Target: 5'- gCCCgccgcuGCCGGcgggccACCUgaGGAGCCCGGGg -3' miRNA: 3'- -GGGauu---UGGUC------UGGAa-CUUCGGGCUC- -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 92764 | 0.71 | 0.84543 |
Target: 5'- gCCgcucGGACCGGGCC---GAGCCCGGGc -3' miRNA: 3'- gGGa---UUUGGUCUGGaacUUCGGGCUC- -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 37647 | 0.72 | 0.819696 |
Target: 5'- cCCCcAAGCCcuuGGCCUUGGccCCCGAGc -3' miRNA: 3'- -GGGaUUUGGu--CUGGAACUucGGGCUC- -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 1232 | 0.72 | 0.80162 |
Target: 5'- gCCgucGCCGGcCCcggGAAGCCCGAGu -3' miRNA: 3'- gGGauuUGGUCuGGaa-CUUCGGGCUC- -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 30943 | 0.73 | 0.773306 |
Target: 5'- cCCCUcgGGGgCGGGCCUcGAGGCCCGc- -3' miRNA: 3'- -GGGA--UUUgGUCUGGAaCUUCGGGCuc -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 81214 | 0.76 | 0.608501 |
Target: 5'- ---cGAGCCGGACCaccgUGgcGCCCGAGg -3' miRNA: 3'- gggaUUUGGUCUGGa---ACuuCGGGCUC- -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 28954 | 0.76 | 0.587481 |
Target: 5'- gCCgAAGCCAGGCCc--AAGCCCGAGc -3' miRNA: 3'- gGGaUUUGGUCUGGaacUUCGGGCUC- -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 30719 | 0.77 | 0.535656 |
Target: 5'- cCCCggcGCCGGGCCgccAGGCCCGAGc -3' miRNA: 3'- -GGGauuUGGUCUGGaacUUCGGGCUC- -5' |
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23692 | 3' | -51.8 | NC_005261.1 | + | 30763 | 0.77 | 0.52547 |
Target: 5'- gCCCUAGuCCGGGCC--GGAGCCCGGc -3' miRNA: 3'- -GGGAUUuGGUCUGGaaCUUCGGGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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