miRNA display CGI


Results 21 - 40 of 412 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23692 5' -70.9 NC_005261.1 + 131833 0.66 0.299068
Target:  5'- uGaCGCGGcGCCCGCCuGCUgCg-GGGUg -3'
miRNA:   3'- gC-GCGCC-CGGGCGGcCGGgGgaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 17927 0.66 0.299068
Target:  5'- aGCGaguCGGGCCCGCUGGCgUUCcGGa- -3'
miRNA:   3'- gCGC---GCCCGGGCGGCCGgGGGaCCcg -5'
23692 5' -70.9 NC_005261.1 + 2988 0.66 0.299068
Target:  5'- gGgGCucGGCCUGgCGGCCCggcgCCgGGGCu -3'
miRNA:   3'- gCgCGc-CCGGGCgGCCGGG----GGaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 58263 0.66 0.299068
Target:  5'- cCGCGCcGcGCUCGCCGcGCUCacgGGGCc -3'
miRNA:   3'- -GCGCGcC-CGGGCGGC-CGGGggaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 100641 0.66 0.298438
Target:  5'- gGCGCGcGGCCCGCgccgcaaCGGCgCgCgucgcgGGGUu -3'
miRNA:   3'- gCGCGC-CCGGGCG-------GCCGgGgGa-----CCCG- -5'
23692 5' -70.9 NC_005261.1 + 91124 0.66 0.297809
Target:  5'- uCGCGCGccgcggccgaGGCCUcaGCCGuGCCgCCCggcgaguggcccGGGCg -3'
miRNA:   3'- -GCGCGC----------CCGGG--CGGC-CGG-GGGa-----------CCCG- -5'
23692 5' -70.9 NC_005261.1 + 97846 0.66 0.296555
Target:  5'- gGCgGCGGGCgCCgccgcggcagcgcgGCCGGCaucgauuuccgagCCCC-GGGCc -3'
miRNA:   3'- gCG-CGCCCG-GG--------------CGGCCG-------------GGGGaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 44724 0.66 0.292816
Target:  5'- gCGCGCaGGGCgCUGCagcugGGCCCCgagCUGcGCg -3'
miRNA:   3'- -GCGCG-CCCG-GGCGg----CCGGGG---GACcCG- -5'
23692 5' -70.9 NC_005261.1 + 12445 0.66 0.292816
Target:  5'- gGCGUcGGCCgCGUCGGCgCCCC--GGUa -3'
miRNA:   3'- gCGCGcCCGG-GCGGCCG-GGGGacCCG- -5'
23692 5' -70.9 NC_005261.1 + 59005 0.66 0.292816
Target:  5'- uGCGcCGGGCUCGCCcagcGGCgCCgCCaggaacGGGUg -3'
miRNA:   3'- gCGC-GCCCGGGCGG----CCG-GG-GGa-----CCCG- -5'
23692 5' -70.9 NC_005261.1 + 103093 0.66 0.292816
Target:  5'- gGC-CGGGCCCaGcCCGGCCagcgCCCccGGCg -3'
miRNA:   3'- gCGcGCCCGGG-C-GGCCGG----GGGacCCG- -5'
23692 5' -70.9 NC_005261.1 + 103380 0.66 0.292816
Target:  5'- cCGCGCGccGCCgCGCCgcGGCCgCCUGcGCc -3'
miRNA:   3'- -GCGCGCc-CGG-GCGG--CCGGgGGACcCG- -5'
23692 5' -70.9 NC_005261.1 + 98674 0.66 0.292816
Target:  5'- aGgGCGGGCuCCGCCGGggCCg-GaGGCg -3'
miRNA:   3'- gCgCGCCCG-GGCGGCCggGGgaC-CCG- -5'
23692 5' -70.9 NC_005261.1 + 125343 0.66 0.292816
Target:  5'- gCGCGCaGGGCguCCaGCaGGCUCCgCcGGGCa -3'
miRNA:   3'- -GCGCG-CCCG--GG-CGgCCGGGG-GaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 117949 0.66 0.292816
Target:  5'- gCGCGCucgcugcuacGGGCgCGCUcGCUgCCaUGGGCg -3'
miRNA:   3'- -GCGCG----------CCCGgGCGGcCGGgGG-ACCCG- -5'
23692 5' -70.9 NC_005261.1 + 72875 0.66 0.292816
Target:  5'- gCGgGCaGGUCCGCCccGCCgCCgGGGUa -3'
miRNA:   3'- -GCgCGcCCGGGCGGc-CGGgGGaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 4945 0.66 0.292816
Target:  5'- cCGCGcCGcGGCCCaggcgcccccgGCCGcggcGUCCUCUGGGg -3'
miRNA:   3'- -GCGC-GC-CCGGG-----------CGGC----CGGGGGACCCg -5'
23692 5' -70.9 NC_005261.1 + 125295 0.66 0.292816
Target:  5'- gGcCGCGGGC--GCCGGaCCCgC-GGGCg -3'
miRNA:   3'- gC-GCGCCCGggCGGCC-GGGgGaCCCG- -5'
23692 5' -70.9 NC_005261.1 + 91452 0.66 0.292816
Target:  5'- uGCGCGGcacggcCCCGcCCGcGCCuCCCaGcGGCg -3'
miRNA:   3'- gCGCGCCc-----GGGC-GGC-CGG-GGGaC-CCG- -5'
23692 5' -70.9 NC_005261.1 + 57211 0.66 0.292816
Target:  5'- gCGCGCGGGUCCccccuaguacgcGCuCaGCCCCac-GGCg -3'
miRNA:   3'- -GCGCGCCCGGG------------CG-GcCGGGGgacCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.