miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23693 3' -54.9 NC_005261.1 + 23525 0.66 0.937728
Target:  5'- aCGCG-GUCGGgcgagCGGCa-GAGGCGG-Ca -3'
miRNA:   3'- -GCGCaCAGCUa----GCCGagCUUCGUCaG- -5'
23693 3' -54.9 NC_005261.1 + 109845 0.66 0.937728
Target:  5'- gGCGUGcCGuugguggCGGCUCcugGggGCAG-Cg -3'
miRNA:   3'- gCGCACaGCua-----GCCGAG---CuuCGUCaG- -5'
23693 3' -54.9 NC_005261.1 + 23634 0.66 0.93326
Target:  5'- gGCGgggGUCGggCGGCUgGAAGggagaggggaggagaGGUCg -3'
miRNA:   3'- gCGCa--CAGCuaGCCGAgCUUCg--------------UCAG- -5'
23693 3' -54.9 NC_005261.1 + 96828 0.66 0.932752
Target:  5'- aGC-UGUCGG-CGGUgUCGAGGCcggGGUCg -3'
miRNA:   3'- gCGcACAGCUaGCCG-AGCUUCG---UCAG- -5'
23693 3' -54.9 NC_005261.1 + 13694 0.66 0.932752
Target:  5'- gGCGUGgggCGGggcgGGCUgGggGCGGg- -3'
miRNA:   3'- gCGCACa--GCUag--CCGAgCuuCGUCag -5'
23693 3' -54.9 NC_005261.1 + 13074 0.66 0.927533
Target:  5'- gCGCGUccgccggcccGUCGGcgggcggcgggcUCGGCUCGggGgC-GUCg -3'
miRNA:   3'- -GCGCA----------CAGCU------------AGCCGAGCuuC-GuCAG- -5'
23693 3' -54.9 NC_005261.1 + 43169 0.66 0.927533
Target:  5'- uCGCGgcgCGAUaCGGCgccgccggCGAGGCAGa- -3'
miRNA:   3'- -GCGCacaGCUA-GCCGa-------GCUUCGUCag -5'
23693 3' -54.9 NC_005261.1 + 108673 0.66 0.916364
Target:  5'- uCGCGUccucGUCGucCGGCUCGggGaAGUa -3'
miRNA:   3'- -GCGCA----CAGCuaGCCGAGCuuCgUCAg -5'
23693 3' -54.9 NC_005261.1 + 48442 0.67 0.884241
Target:  5'- uCGCGgugcGUgGcgCGGC-CGgcGCGGUCa -3'
miRNA:   3'- -GCGCa---CAgCuaGCCGaGCuuCGUCAG- -5'
23693 3' -54.9 NC_005261.1 + 24385 0.68 0.869774
Target:  5'- gGUGggcUCG-UCGGCggCGggGCGGUCc -3'
miRNA:   3'- gCGCac-AGCuAGCCGa-GCuuCGUCAG- -5'
23693 3' -54.9 NC_005261.1 + 115467 0.68 0.84646
Target:  5'- cCGCcucgGUGUCGGUCgcgGGCUCGGccgcGGCGG-Cg -3'
miRNA:   3'- -GCG----CACAGCUAG---CCGAGCU----UCGUCaG- -5'
23693 3' -54.9 NC_005261.1 + 120293 0.69 0.821364
Target:  5'- gCGCGUGuucuUCGAg-GGCggCGAGGCuGUCu -3'
miRNA:   3'- -GCGCAC----AGCUagCCGa-GCUUCGuCAG- -5'
23693 3' -54.9 NC_005261.1 + 34690 0.69 0.821364
Target:  5'- uGCGUGaCGGUgGGCcccucgcaccUCGAgccucAGCGGUCg -3'
miRNA:   3'- gCGCACaGCUAgCCG----------AGCU-----UCGUCAG- -5'
23693 3' -54.9 NC_005261.1 + 13135 0.69 0.821364
Target:  5'- gCGCGUGU-GGUCGGUgacggCGcgcaccAGGCGGUCc -3'
miRNA:   3'- -GCGCACAgCUAGCCGa----GC------UUCGUCAG- -5'
23693 3' -54.9 NC_005261.1 + 4314 0.7 0.736579
Target:  5'- cCGCGUagCGcgCGGCcgccucgcggaucUCGggGCAGUCc -3'
miRNA:   3'- -GCGCAcaGCuaGCCG-------------AGCuuCGUCAG- -5'
23693 3' -54.9 NC_005261.1 + 74273 0.74 0.553793
Target:  5'- gCGCGcGUCcg-CGGCgggCGggGCGGUCg -3'
miRNA:   3'- -GCGCaCAGcuaGCCGa--GCuuCGUCAG- -5'
23693 3' -54.9 NC_005261.1 + 16206 0.76 0.428887
Target:  5'- cCGCGUGauggccUCGAggcUCGGCcagcccUCGggGCGGUCg -3'
miRNA:   3'- -GCGCAC------AGCU---AGCCG------AGCuuCGUCAG- -5'
23693 3' -54.9 NC_005261.1 + 14098 0.78 0.352781
Target:  5'- uCGCGgucGUCGAggcagacgggcgUCGGCUCGGgcggugGGCAGUCg -3'
miRNA:   3'- -GCGCa--CAGCU------------AGCCGAGCU------UCGUCAG- -5'
23693 3' -54.9 NC_005261.1 + 11986 1.09 0.003469
Target:  5'- cCGCGUGUCGAUCGGCUCGAAGCAGUCc -3'
miRNA:   3'- -GCGCACAGCUAGCCGAGCUUCGUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.