miRNA display CGI


Results 1 - 20 of 710 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23693 5' -62.1 NC_005261.1 + 83506 0.66 0.674062
Target:  5'- gGCGCgcgCGCCgGUGgaagcggcACGCGCccUCcAGCCc -3'
miRNA:   3'- -CGCGa--GCGGgCGC--------UGCGCG--AGcUCGG- -5'
23693 5' -62.1 NC_005261.1 + 32302 0.66 0.674062
Target:  5'- gGCGC-CGCCCcCGcCGCcGC-CGcGGCCg -3'
miRNA:   3'- -CGCGaGCGGGcGCuGCG-CGaGC-UCGG- -5'
23693 5' -62.1 NC_005261.1 + 107374 0.66 0.674062
Target:  5'- gGCGCcggggCGCCCGCGuccACGaacgGC-CaGAGCCc -3'
miRNA:   3'- -CGCGa----GCGGGCGC---UGCg---CGaG-CUCGG- -5'
23693 5' -62.1 NC_005261.1 + 128729 0.66 0.674062
Target:  5'- cCGCcCGCCCGcCGAgcugucggcauCGuCGaCUCGGGCUa -3'
miRNA:   3'- cGCGaGCGGGC-GCU-----------GC-GC-GAGCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 94594 0.66 0.674062
Target:  5'- cGCGCccucCGCCCaCGAgCGCGCgcccUCGccGCCg -3'
miRNA:   3'- -CGCGa---GCGGGcGCU-GCGCG----AGCu-CGG- -5'
23693 5' -62.1 NC_005261.1 + 116197 0.66 0.674062
Target:  5'- gGCGCgUCG-CCGCaGAaGCGCUCcagGAGCg -3'
miRNA:   3'- -CGCG-AGCgGGCG-CUgCGCGAG---CUCGg -5'
23693 5' -62.1 NC_005261.1 + 35745 0.66 0.674062
Target:  5'- uGgGC-CGaagccagCCGCGAagGCgGCUCGGGCCg -3'
miRNA:   3'- -CgCGaGCg------GGCGCUg-CG-CGAGCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 90372 0.66 0.674062
Target:  5'- aCGCUCGUgCGCGGCGagGC-CccGCCg -3'
miRNA:   3'- cGCGAGCGgGCGCUGCg-CGaGcuCGG- -5'
23693 5' -62.1 NC_005261.1 + 43427 0.66 0.674062
Target:  5'- cCGC-CGCCgGCGGgGagcugGCUCGGcGCCu -3'
miRNA:   3'- cGCGaGCGGgCGCUgCg----CGAGCU-CGG- -5'
23693 5' -62.1 NC_005261.1 + 14539 0.66 0.674062
Target:  5'- gGCGCggcCGCCCgGCGACcaCGCcuuUCGuacGGCCc -3'
miRNA:   3'- -CGCGa--GCGGG-CGCUGc-GCG---AGC---UCGG- -5'
23693 5' -62.1 NC_005261.1 + 76431 0.66 0.674062
Target:  5'- aGCGCcggCGCCaugGCgGACGCGCcCGAcgGCg -3'
miRNA:   3'- -CGCGa--GCGGg--CG-CUGCGCGaGCU--CGg -5'
23693 5' -62.1 NC_005261.1 + 55164 0.66 0.674062
Target:  5'- aGCGCcgcCGCCgGCGGCuCGCg-GGGCg -3'
miRNA:   3'- -CGCGa--GCGGgCGCUGcGCGagCUCGg -5'
23693 5' -62.1 NC_005261.1 + 116624 0.66 0.674062
Target:  5'- cCGCcCGCCCGcCGACGaGggCGAGgCCc -3'
miRNA:   3'- cGCGaGCGGGC-GCUGCgCgaGCUC-GG- -5'
23693 5' -62.1 NC_005261.1 + 69353 0.66 0.673091
Target:  5'- gGCGaCgacgCGgCCGCGcGCGCGCUgGAccucgagaugaccGCCg -3'
miRNA:   3'- -CGC-Ga---GCgGGCGC-UGCGCGAgCU-------------CGG- -5'
23693 5' -62.1 NC_005261.1 + 115117 0.66 0.673091
Target:  5'- gGCGCU-GCCCaCGGCGCccacgauggugucGUacaCGAGCCg -3'
miRNA:   3'- -CGCGAgCGGGcGCUGCG-------------CGa--GCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 23847 0.66 0.673091
Target:  5'- uGgGCUCGCCggggcaggccggcUGgGGCGgGCUugccccgggCGGGCCg -3'
miRNA:   3'- -CgCGAGCGG-------------GCgCUGCgCGA---------GCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 23790 0.66 0.673091
Target:  5'- uGgGCUCGCCggggcaggccggcUGgGGCGgGCUugccccgggCGGGCCg -3'
miRNA:   3'- -CgCGAGCGG-------------GCgCUGCgCGA---------GCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 28434 0.66 0.671148
Target:  5'- cGCGCgcaccgCGgCCGgccauggcgucuccCGGCGgGCaCGAGCCg -3'
miRNA:   3'- -CGCGa-----GCgGGC--------------GCUGCgCGaGCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 46542 0.66 0.664339
Target:  5'- cGCGCUggcagucguccCGCagCGCGAgCGCuGCUgCGAGCg -3'
miRNA:   3'- -CGCGA-----------GCGg-GCGCU-GCG-CGA-GCUCGg -5'
23693 5' -62.1 NC_005261.1 + 74791 0.66 0.664339
Target:  5'- cGCGCaUCcggccuaucgagGCCCGCGugGCGgaggUG-GCCg -3'
miRNA:   3'- -CGCG-AG------------CGGGCGCugCGCga--GCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.