miRNA display CGI


Results 1 - 20 of 710 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23693 5' -62.1 NC_005261.1 + 12021 1.12 0.000562
Target:  5'- aGCGCUCGCCCGCGACGCGCUCGAGCCc -3'
miRNA:   3'- -CGCGAGCGGGCGCUGCGCGAGCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 29815 0.85 0.041794
Target:  5'- gGCGCgggCGCCCGCGcCGCGCUcgcCGAGCUg -3'
miRNA:   3'- -CGCGa--GCGGGCGCuGCGCGA---GCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 104213 0.85 0.042894
Target:  5'- gGCGCUCGCgCGCGGCGCGCacCGuGCCc -3'
miRNA:   3'- -CGCGAGCGgGCGCUGCGCGa-GCuCGG- -5'
23693 5' -62.1 NC_005261.1 + 31846 0.85 0.04637
Target:  5'- cGUGCUgGCCuCGCGGCGCGUcuUCGGGCCc -3'
miRNA:   3'- -CGCGAgCGG-GCGCUGCGCG--AGCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 133890 0.84 0.050119
Target:  5'- uGCGCaaGCCCGCGGCGCGCUgCuGGCCu -3'
miRNA:   3'- -CGCGagCGGGCGCUGCGCGA-GcUCGG- -5'
23693 5' -62.1 NC_005261.1 + 31310 0.83 0.064867
Target:  5'- cGCGCgggGCCCGCgGGCGCGCUCGccGCCa -3'
miRNA:   3'- -CGCGag-CGGGCG-CUGCGCGAGCu-CGG- -5'
23693 5' -62.1 NC_005261.1 + 131184 0.82 0.073735
Target:  5'- aGCgGCUaCGCCCGCGGCGCGgUCGccGCCg -3'
miRNA:   3'- -CG-CGA-GCGGGCGCUGCGCgAGCu-CGG- -5'
23693 5' -62.1 NC_005261.1 + 130644 0.82 0.073735
Target:  5'- cGCGCgugCGCUCGcCGACGCGCUgcuccucggCGAGCCc -3'
miRNA:   3'- -CGCGa--GCGGGC-GCUGCGCGA---------GCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 56028 0.82 0.073735
Target:  5'- aCGCaaucgCGCCCGUGACGCGCgCGAGCg -3'
miRNA:   3'- cGCGa----GCGGGCGCUGCGCGaGCUCGg -5'
23693 5' -62.1 NC_005261.1 + 30126 0.82 0.075644
Target:  5'- gGCGCg-GCCCGCGACGCGgUgGAGCg -3'
miRNA:   3'- -CGCGagCGGGCGCUGCGCgAgCUCGg -5'
23693 5' -62.1 NC_005261.1 + 2738 0.81 0.079603
Target:  5'- uGCGCUUGCgCCGCGGCGgGCcgucgcggCGGGCCu -3'
miRNA:   3'- -CGCGAGCG-GGCGCUGCgCGa-------GCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 106656 0.81 0.085916
Target:  5'- cGCGCUCGCCgGCGcggucguccaGCGCGCgcccgaGGGCCg -3'
miRNA:   3'- -CGCGAGCGGgCGC----------UGCGCGag----CUCGG- -5'
23693 5' -62.1 NC_005261.1 + 108747 0.81 0.085916
Target:  5'- gGCGCcgcggCGUCCGCGGCGCGC-CGcGCCa -3'
miRNA:   3'- -CGCGa----GCGGGCGCUGCGCGaGCuCGG- -5'
23693 5' -62.1 NC_005261.1 + 100683 0.8 0.090386
Target:  5'- cGCGCgagugcaccgCGgCCGCGGCGCGCgccgccCGAGCCg -3'
miRNA:   3'- -CGCGa---------GCgGGCGCUGCGCGa-----GCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 93418 0.8 0.095077
Target:  5'- uGCGCccgCGcCCCGCGAUGUGCUUGAggGCCg -3'
miRNA:   3'- -CGCGa--GC-GGGCGCUGCGCGAGCU--CGG- -5'
23693 5' -62.1 NC_005261.1 + 2391 0.8 0.095077
Target:  5'- cGCGCUggcggcgagcgCGCCCGCGGgcccCGCGCggcggCGGGCCg -3'
miRNA:   3'- -CGCGA-----------GCGGGCGCU----GCGCGa----GCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 107879 0.8 0.095077
Target:  5'- cGCGCUcgCGCCCGCGGCcCGCUUGuccgcGGCCg -3'
miRNA:   3'- -CGCGA--GCGGGCGCUGcGCGAGC-----UCGG- -5'
23693 5' -62.1 NC_005261.1 + 93483 0.8 0.097508
Target:  5'- cGCGCgUCGCCCGCGgcgaaGCGCGCgaaccgCGGcGCCg -3'
miRNA:   3'- -CGCG-AGCGGGCGC-----UGCGCGa-----GCU-CGG- -5'
23693 5' -62.1 NC_005261.1 + 105112 0.8 0.097508
Target:  5'- gGgGCUUGCCCGCG-CGgGCgCGGGCCg -3'
miRNA:   3'- -CgCGAGCGGGCGCuGCgCGaGCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 74948 0.8 0.099998
Target:  5'- gGCGCgggCGCgCuCGGCGCGCUCGAGgCCg -3'
miRNA:   3'- -CGCGa--GCGgGcGCUGCGCGAGCUC-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.