miRNA display CGI


Results 1 - 20 of 710 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23693 5' -62.1 NC_005261.1 + 112 0.67 0.557361
Target:  5'- cCGC-CGCCCGCGccgGCGCcgccccugguGCUCGcggGGCUg -3'
miRNA:   3'- cGCGaGCGGGCGC---UGCG----------CGAGC---UCGG- -5'
23693 5' -62.1 NC_005261.1 + 225 0.66 0.625285
Target:  5'- gGUGCUCGCgggccCCGCGAgCGgGCcCG-GCUg -3'
miRNA:   3'- -CGCGAGCG-----GGCGCU-GCgCGaGCuCGG- -5'
23693 5' -62.1 NC_005261.1 + 1167 0.71 0.388567
Target:  5'- cGCGCgccgGCCCGCGcCGCGgC-CgGGGCCg -3'
miRNA:   3'- -CGCGag--CGGGCGCuGCGC-GaG-CUCGG- -5'
23693 5' -62.1 NC_005261.1 + 1341 0.67 0.576618
Target:  5'- cGCGCcgCGCCUGCaccaGCGUcucccgCGGGCCc -3'
miRNA:   3'- -CGCGa-GCGGGCGcug-CGCGa-----GCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 1429 0.66 0.625285
Target:  5'- gGCGCcCGCCUccagcaccagcgGCGGCGC-CUCG-GCg -3'
miRNA:   3'- -CGCGaGCGGG------------CGCUGCGcGAGCuCGg -5'
23693 5' -62.1 NC_005261.1 + 1565 0.72 0.30068
Target:  5'- -gGC-CGCa-GCGGCGCGC-CGAGCCc -3'
miRNA:   3'- cgCGaGCGggCGCUGCGCGaGCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 1652 0.71 0.349979
Target:  5'- aGCGCcgCGCUcugCGCGGCcauguccuuGCGCccgUCGAGCCg -3'
miRNA:   3'- -CGCGa-GCGG---GCGCUG---------CGCG---AGCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 1855 0.72 0.328169
Target:  5'- gGCGCcggGCCCGaaGACGCGCcgCGAGgCCa -3'
miRNA:   3'- -CGCGag-CGGGCg-CUGCGCGa-GCUC-GG- -5'
23693 5' -62.1 NC_005261.1 + 1891 0.72 0.307382
Target:  5'- gGCGCgCGCCaGCGcGCGcCGCUCaGGCCa -3'
miRNA:   3'- -CGCGaGCGGgCGC-UGC-GCGAGcUCGG- -5'
23693 5' -62.1 NC_005261.1 + 1954 0.68 0.525078
Target:  5'- gGCGCgcagguacacgugCGCCUGCccGACG-GC-CGGGCCa -3'
miRNA:   3'- -CGCGa------------GCGGGCG--CUGCgCGaGCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 2267 0.67 0.575651
Target:  5'- gGCGCUCGUCCucgccggGCGGCGcCGCcagcGCCu -3'
miRNA:   3'- -CGCGAGCGGG-------CGCUGC-GCGagcuCGG- -5'
23693 5' -62.1 NC_005261.1 + 2391 0.8 0.095077
Target:  5'- cGCGCUggcggcgagcgCGCCCGCGGgcccCGCGCggcggCGGGCCg -3'
miRNA:   3'- -CGCGA-----------GCGGGCGCU----GCGCGa----GCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 2674 0.7 0.396612
Target:  5'- cGCGCUgGggaCCCgGCGGCGCGC-CGgcuuuuGGCCg -3'
miRNA:   3'- -CGCGAgC---GGG-CGCUGCGCGaGC------UCGG- -5'
23693 5' -62.1 NC_005261.1 + 2738 0.81 0.079603
Target:  5'- uGCGCUUGCgCCGCGGCGgGCcgucgcggCGGGCCu -3'
miRNA:   3'- -CGCGAGCG-GGCGCUGCgCGa-------GCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 3342 0.68 0.500878
Target:  5'- cGCGCcgcggCGCCCG--GCGCGC-CG-GCCu -3'
miRNA:   3'- -CGCGa----GCGGGCgcUGCGCGaGCuCGG- -5'
23693 5' -62.1 NC_005261.1 + 3396 0.67 0.596019
Target:  5'- cGCGCcggcacuucCGCCgGCGGgcugaagaGCGCgCGGGCCa -3'
miRNA:   3'- -CGCGa--------GCGGgCGCUg-------CGCGaGCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 3452 0.71 0.349979
Target:  5'- cGCGCggGCCgcCGCGcCGCGCgUCGAGUa -3'
miRNA:   3'- -CGCGagCGG--GCGCuGCGCG-AGCUCGg -5'
23693 5' -62.1 NC_005261.1 + 3504 0.67 0.586303
Target:  5'- cGCGC-CGCCagCGCGGCcgccuccaGCGCggCG-GCCg -3'
miRNA:   3'- -CGCGaGCGG--GCGCUG--------CGCGa-GCuCGG- -5'
23693 5' -62.1 NC_005261.1 + 3561 0.71 0.379841
Target:  5'- gGCGCggCGCCgcuaaggCGCG-CGCGCUccaccgcgucgCGGGCCg -3'
miRNA:   3'- -CGCGa-GCGG-------GCGCuGCGCGA-----------GCUCGG- -5'
23693 5' -62.1 NC_005261.1 + 3634 0.67 0.576618
Target:  5'- cGCGCUCcggguGCgCCGCuaGCGCGuCUgGAGCg -3'
miRNA:   3'- -CGCGAG-----CG-GGCGc-UGCGC-GAgCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.