Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23695 | 3' | -50.7 | NC_005261.1 | + | 32989 | 0.79 | 0.525175 |
Target: 5'- aCCGCGgaggaggGGGCcgaccgggGAAGGGGGGAGGGGg -3' miRNA: 3'- gGGCGCaa-----CCCG--------CUUUUUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 22980 | 0.8 | 0.505109 |
Target: 5'- aCCGgGaggagGcGGCGGAGGAAGAGGGGGg -3' miRNA: 3'- gGGCgCaa---C-CCGCUUUUUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 22764 | 0.8 | 0.505109 |
Target: 5'- cCCaCGCGUcuggGGGCGGGccccgcGAGAAGGGGg -3' miRNA: 3'- -GG-GCGCAa---CCCGCUUuu----UUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 32934 | 0.83 | 0.37587 |
Target: 5'- --gGCGggggggGGGCGggGAGGGGAGGGGa -3' miRNA: 3'- gggCGCaa----CCCGCuuUUUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 90126 | 0.85 | 0.298251 |
Target: 5'- gCCCGCGgcgaGGGCGA----GGAGGGGGg -3' miRNA: 3'- -GGGCGCaa--CCCGCUuuuuUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 138141 | 0.75 | 0.741734 |
Target: 5'- gCCgGCGggaUGGcGCGggGaggagagGAGGGAGGGGg -3' miRNA: 3'- -GGgCGCa--ACC-CGCuuU-------UUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 28007 | 0.75 | 0.741734 |
Target: 5'- cUCCGCGaaaggGGGcCGGcggggagGAGAGGGAGGGGa -3' miRNA: 3'- -GGGCGCaa---CCC-GCU-------UUUUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 30827 | 0.72 | 0.896823 |
Target: 5'- gCCCGgGgacgGGGcCGAgGAGGAGGAGGaGGa -3' miRNA: 3'- -GGGCgCaa--CCC-GCU-UUUUUCUUCC-CC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 74906 | 0.72 | 0.882942 |
Target: 5'- gCCCGCGcUGGccgcGCGggGGAGGGcgaggacGGGGa -3' miRNA: 3'- -GGGCGCaACC----CGCuuUUUUCUu------CCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 68085 | 0.72 | 0.882942 |
Target: 5'- gCCCGCGg-GGGCGggGAGGccguGAAGuucGGGc -3' miRNA: 3'- -GGGCGCaaCCCGCuuUUUU----CUUC---CCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 26 | 0.72 | 0.881501 |
Target: 5'- cCCCGCGcgaccccggggGGGUGuuuuuuGGggGGGGg -3' miRNA: 3'- -GGGCGCaa---------CCCGCuuuuu-UCuuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 4822 | 0.72 | 0.875647 |
Target: 5'- cUCCGCGUUGGGCGc----AGgcGGcGGc -3' miRNA: 3'- -GGGCGCAACCCGCuuuuuUCuuCC-CC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 27320 | 0.72 | 0.875647 |
Target: 5'- gCgCGCGggucaaggGGGCGGAAcgGGGGAAaGGGGg -3' miRNA: 3'- -GgGCGCaa------CCCGCUUU--UUUCUU-CCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 96478 | 0.72 | 0.868121 |
Target: 5'- cUCCGCGgcuggGGGUGAugGGAGcaguGGGGa -3' miRNA: 3'- -GGGCGCaa---CCCGCUuuUUUCuu--CCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 57183 | 0.73 | 0.860372 |
Target: 5'- --aGUGggGucGGCGGGAAGGGggGGGGg -3' miRNA: 3'- gggCGCaaC--CCGCUUUUUUCuuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 22553 | 0.73 | 0.860372 |
Target: 5'- gCCGCGgcGaGauaCGggGAGGGGAGGGGg -3' miRNA: 3'- gGGCGCaaC-Cc--GCuuUUUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 137710 | 0.73 | 0.852405 |
Target: 5'- cCCCGCGcgaccccgggGGGUGuuuuuuGGggGGGGg -3' miRNA: 3'- -GGGCGCaa--------CCCGCuuuuu-UCuuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 5288 | 0.74 | 0.818506 |
Target: 5'- gCCGCGgugcgcgcGGGUcccuggagaGGAGGAGGAGGGGGu -3' miRNA: 3'- gGGCGCaa------CCCG---------CUUUUUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 56001 | 0.74 | 0.800451 |
Target: 5'- aCCGCGgcggGGGCGG----GGgcGGGGa -3' miRNA: 3'- gGGCGCaa--CCCGCUuuuuUCuuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 8828 | 0.75 | 0.742733 |
Target: 5'- gCCCGcCGggcaaggGGGCGggGAcaggccguGGGAGGGGc -3' miRNA: 3'- -GGGC-GCaa-----CCCGCuuUUu-------UCUUCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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