Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23696 | 3' | -54.2 | NC_005261.1 | + | 10771 | 0.84 | 0.203587 |
Target: 5'- uCCUCGUCGUCCUCGUCGUCa------ -3' miRNA: 3'- -GGAGCAGCAGGAGCAGCAGccucaac -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 10816 | 1.1 | 0.004733 |
Target: 5'- uCCUCGUCGUCCUCGUCGUCGGAGUUGu -3' miRNA: 3'- -GGAGCAGCAGGAGCAGCAGCCUCAAC- -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 11013 | 0.68 | 0.90193 |
Target: 5'- uCCUCGaCGgCCUCGUCGcCGGGc--- -3' miRNA: 3'- -GGAGCaGCaGGAGCAGCaGCCUcaac -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 12787 | 0.73 | 0.687543 |
Target: 5'- gCUCGUCGgcgagCUCGUCGUCGGcGUc- -3' miRNA: 3'- gGAGCAGCag---GAGCAGCAGCCuCAac -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 12840 | 0.67 | 0.930493 |
Target: 5'- uCCUCGUCGgggaagaaCUCGUCGUCGc----- -3' miRNA: 3'- -GGAGCAGCag------GAGCAGCAGCcucaac -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 13853 | 0.67 | 0.935499 |
Target: 5'- uCCUCGUCG-CCggCGUCGcCGGcGg-- -3' miRNA: 3'- -GGAGCAGCaGGa-GCAGCaGCCuCaac -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 16390 | 0.72 | 0.746704 |
Target: 5'- gCCUCGcCGUCgUCGUCGcCGGgcGGUg- -3' miRNA: 3'- -GGAGCaGCAGgAGCAGCaGCC--UCAac -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 22860 | 0.72 | 0.717448 |
Target: 5'- --aCGUCGUCCUCGcCGUCcGAGaUGg -3' miRNA: 3'- ggaGCAGCAGGAGCaGCAGcCUCaAC- -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 23069 | 0.69 | 0.867645 |
Target: 5'- uCUUCGUCGUCCUCGUaGUCGn----- -3' miRNA: 3'- -GGAGCAGCAGGAGCAgCAGCcucaac -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 23090 | 0.71 | 0.811079 |
Target: 5'- uCCUCGuagUCGUCCUCGuagUCGUCcucgcugcuGGAGUc- -3' miRNA: 3'- -GGAGC---AGCAGGAGC---AGCAG---------CCUCAac -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 32605 | 0.77 | 0.487868 |
Target: 5'- uCCUCGUCGUCCgCGUCcUCGGAc--- -3' miRNA: 3'- -GGAGCAGCAGGaGCAGcAGCCUcaac -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 34822 | 0.66 | 0.956663 |
Target: 5'- uCCUgGUCGgagUCggaggagUCGUCGUCGGGGc-- -3' miRNA: 3'- -GGAgCAGCa--GG-------AGCAGCAGCCUCaac -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 53154 | 0.69 | 0.867645 |
Target: 5'- --cCGUCGcgCCgcCGUCGUCGGGGUc- -3' miRNA: 3'- ggaGCAGCa-GGa-GCAGCAGCCUCAac -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 81325 | 0.67 | 0.944807 |
Target: 5'- ---gGUCGUCgC-CGUCGUCGGGGc-- -3' miRNA: 3'- ggagCAGCAG-GaGCAGCAGCCUCaac -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 86099 | 0.7 | 0.819702 |
Target: 5'- uUCUCGUCGgcgCC-CGggCGUCGGAGc-- -3' miRNA: 3'- -GGAGCAGCa--GGaGCa-GCAGCCUCaac -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 86517 | 0.67 | 0.94027 |
Target: 5'- gCUUGcCGUCCUUGUCGcagCGcGGGUUc -3' miRNA: 3'- gGAGCaGCAGGAGCAGCa--GC-CUCAAc -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 86995 | 0.67 | 0.94027 |
Target: 5'- cCCUCGUgGcCCUCGUCGaaGGccaAGUg- -3' miRNA: 3'- -GGAGCAgCaGGAGCAGCagCC---UCAac -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 93708 | 0.67 | 0.935499 |
Target: 5'- gCCUCuUCcUCCUCGUCGUCGucGgcGg -3' miRNA: 3'- -GGAGcAGcAGGAGCAGCAGCcuCaaC- -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 98988 | 0.67 | 0.94027 |
Target: 5'- --aCGUCGUCCUCGgcaaucuucagCGUCGcGAGc-- -3' miRNA: 3'- ggaGCAGCAGGAGCa----------GCAGC-CUCaac -5' |
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23696 | 3' | -54.2 | NC_005261.1 | + | 102573 | 0.66 | 0.967276 |
Target: 5'- gCCUCGcCGUCCgCGUCGgCGGc---- -3' miRNA: 3'- -GGAGCaGCAGGaGCAGCaGCCucaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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