miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 3' -59 NC_005261.1 + 109987 0.68 0.615275
Target:  5'- -cGCCccgGCAGGucgucguggacACgCCCGCCGGCGc -3'
miRNA:   3'- aaCGGaaaCGUCC-----------UG-GGGCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 81461 0.68 0.615275
Target:  5'- -cGCCagcaGCAGGGCCCaCGCCGcccaGAg -3'
miRNA:   3'- aaCGGaaa-CGUCCUGGG-GCGGCug--CU- -5'
23698 3' -59 NC_005261.1 + 118513 0.68 0.625484
Target:  5'- -cGCCgcucgGCgAGGcgcccuGCCCCGCCGACc- -3'
miRNA:   3'- aaCGGaaa--CG-UCC------UGGGGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 62380 0.68 0.635698
Target:  5'- -cGCCUgcgGCAGcGGCaCCGUCGugGGg -3'
miRNA:   3'- aaCGGAaa-CGUC-CUGgGGCGGCugCU- -5'
23698 3' -59 NC_005261.1 + 88338 0.68 0.635698
Target:  5'- -gGCUg--GCGGcGCCCCGCCGccGCGGc -3'
miRNA:   3'- aaCGGaaaCGUCcUGGGGCGGC--UGCU- -5'
23698 3' -59 NC_005261.1 + 43412 0.68 0.635698
Target:  5'- -cGCCggggGCGGccuCCgCCGCCGGCGGg -3'
miRNA:   3'- aaCGGaaa-CGUCcu-GG-GGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 28660 0.67 0.645909
Target:  5'- -gGCCg--GCGGGGCCgaCGaCGACGAg -3'
miRNA:   3'- aaCGGaaaCGUCCUGGg-GCgGCUGCU- -5'
23698 3' -59 NC_005261.1 + 127727 0.67 0.645909
Target:  5'- cUGCCUgguaGCGGGAgCuuGgCGGCGGg -3'
miRNA:   3'- aACGGAaa--CGUCCUgGggCgGCUGCU- -5'
23698 3' -59 NC_005261.1 + 84283 0.67 0.645909
Target:  5'- gUGCCgccgGCGGccccGGCCCCGgCGGCGc -3'
miRNA:   3'- aACGGaaa-CGUC----CUGGGGCgGCUGCu -5'
23698 3' -59 NC_005261.1 + 1199 0.67 0.656109
Target:  5'- -gGCCgggcgcgGCGcGGAccCCCCGCCGAUGc -3'
miRNA:   3'- aaCGGaaa----CGU-CCU--GGGGCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 22683 0.67 0.656109
Target:  5'- gUGCCgccGgGGGACgggCCCGgCGACGAg -3'
miRNA:   3'- aACGGaaaCgUCCUG---GGGCgGCUGCU- -5'
23698 3' -59 NC_005261.1 + 74484 0.67 0.656109
Target:  5'- gUGCCUggGCGGGAUCUCGgCGcucuuCGGg -3'
miRNA:   3'- aACGGAaaCGUCCUGGGGCgGCu----GCU- -5'
23698 3' -59 NC_005261.1 + 68509 0.67 0.66629
Target:  5'- -cGCUgaUGCAGgcGugCCUGCCGGCGc -3'
miRNA:   3'- aaCGGaaACGUC--CugGGGCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 42112 0.67 0.676443
Target:  5'- gUGCCggcccaGCAGcccGGCCUCGUCGAUGAc -3'
miRNA:   3'- aACGGaaa---CGUC---CUGGGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 129709 0.67 0.676443
Target:  5'- -gGCCggagGCAGG--CCCGCCGGCu- -3'
miRNA:   3'- aaCGGaaa-CGUCCugGGGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 29267 0.67 0.676443
Target:  5'- -cGCCgcUGgAGGGCCCgcUGCUGACGc -3'
miRNA:   3'- aaCGGaaACgUCCUGGG--GCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 91729 0.67 0.676443
Target:  5'- -cGCCgcgGCGGGcuucgcggcGCUCaCGCCGGCGGc -3'
miRNA:   3'- aaCGGaaaCGUCC---------UGGG-GCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 101544 0.67 0.676443
Target:  5'- -cGCCUcgGCcgccacGACCUCGCCGAgGAu -3'
miRNA:   3'- aaCGGAaaCGuc----CUGGGGCGGCUgCU- -5'
23698 3' -59 NC_005261.1 + 107691 0.67 0.676443
Target:  5'- -cGCCgcgGCGGGGgCgCCGCCGAaCGu -3'
miRNA:   3'- aaCGGaaaCGUCCUgG-GGCGGCU-GCu -5'
23698 3' -59 NC_005261.1 + 108875 0.67 0.685551
Target:  5'- -aGCagcgGguGGACgacggccgcgcugCCCGCCGGCGAg -3'
miRNA:   3'- aaCGgaaaCguCCUG-------------GGGCGGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.