miRNA display CGI


Results 81 - 100 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 51897 0.67 0.752581
Target:  5'- -cGGCGCGCUACaUCG---CCCGGGCg -3'
miRNA:   3'- auUCGCGCGAUGgAGCucgGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 78165 0.67 0.752581
Target:  5'- -cGGCGgGCcACCUgagGAGCCCgGGGCc -3'
miRNA:   3'- auUCGCgCGaUGGAg--CUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 88770 0.67 0.752581
Target:  5'- --cGCuGCGCU-CCUCG-GCCCUGGc- -3'
miRNA:   3'- auuCG-CGCGAuGGAGCuCGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 100877 0.67 0.742845
Target:  5'- gAAGCGCGCgcagccCCUCGuacgcGGCCUCGccGCg -3'
miRNA:   3'- aUUCGCGCGau----GGAGC-----UCGGGGCu-UG- -5'
23699 3' -57.7 NC_005261.1 + 106566 0.67 0.742845
Target:  5'- -cGGCGCGCgccgGCCcCGGGgCCgCCGcGCg -3'
miRNA:   3'- auUCGCGCGa---UGGaGCUC-GG-GGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 20250 0.67 0.742845
Target:  5'- --cGCGCGCU-CCaUGGGCgCCGAGa -3'
miRNA:   3'- auuCGCGCGAuGGaGCUCGgGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 118378 0.68 0.682701
Target:  5'- gGGGCGCGCgGCC-CGAggcgcuggcgGCCgCGGGCg -3'
miRNA:   3'- aUUCGCGCGaUGGaGCU----------CGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 57399 0.68 0.690851
Target:  5'- gGAGCGCGCccgugauccgcgGCCggcgccgCGAGCCCaGGAUg -3'
miRNA:   3'- aUUCGCGCGa-----------UGGa------GCUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 13044 0.68 0.692884
Target:  5'- aGGGCGCGggGCCgcgCGcGCCCCugccGGGCg -3'
miRNA:   3'- aUUCGCGCgaUGGa--GCuCGGGG----CUUG- -5'
23699 3' -57.7 NC_005261.1 + 29534 0.68 0.692884
Target:  5'- aGAGCGCGaaGCUcgCGGGCCCgGAccuGCa -3'
miRNA:   3'- aUUCGCGCgaUGGa-GCUCGGGgCU---UG- -5'
23699 3' -57.7 NC_005261.1 + 30948 0.68 0.692884
Target:  5'- cGGGgGCGg-GCCUCGAGgCCCGccgcGACg -3'
miRNA:   3'- aUUCgCGCgaUGGAGCUCgGGGC----UUG- -5'
23699 3' -57.7 NC_005261.1 + 77084 0.68 0.692884
Target:  5'- gAGGCGCuggcgcggacGCUGCuCUCGAcgGCCgUGAACa -3'
miRNA:   3'- aUUCGCG----------CGAUG-GAGCU--CGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 109528 0.68 0.682701
Target:  5'- --uGCGCGCccGCCgCGGGCCCCc--- -3'
miRNA:   3'- auuCGCGCGa-UGGaGCUCGGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 106723 0.68 0.682701
Target:  5'- gAAGCG-GCccACCUCGugcAGCCCCGGc- -3'
miRNA:   3'- aUUCGCgCGa-UGGAGC---UCGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 44306 0.68 0.682701
Target:  5'- aGGGC-CGCUGCCcgCGGGCgCCGcaGACg -3'
miRNA:   3'- aUUCGcGCGAUGGa-GCUCGgGGC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 74952 0.68 0.672475
Target:  5'- cGGGCGCGCUcggcGCgCUCGAGgCCgCGcGCc -3'
miRNA:   3'- aUUCGCGCGA----UG-GAGCUCgGG-GCuUG- -5'
23699 3' -57.7 NC_005261.1 + 132717 0.68 0.672475
Target:  5'- -cGGCGCcCUACCUCauugcggcGGCCCCGcACu -3'
miRNA:   3'- auUCGCGcGAUGGAGc-------UCGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 59111 0.68 0.6694
Target:  5'- cAGGCGCGCgcgagcuccccgGCCacCGAcucaggccggcgcGCCCCGGGCg -3'
miRNA:   3'- aUUCGCGCGa-----------UGGa-GCU-------------CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 105307 0.68 0.662216
Target:  5'- cGAGCGCGggGuCCUCGcacuccGCCCCGGc- -3'
miRNA:   3'- aUUCGCGCgaU-GGAGCu-----CGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 134713 0.68 0.703016
Target:  5'- -cGGCGCGCccagACCcggcCGGGaCCCGGACu -3'
miRNA:   3'- auUCGCGCGa---UGGa---GCUCgGGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.