miRNA display CGI


Results 101 - 120 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 132447 0.68 0.651932
Target:  5'- aGAGCGCGUgccCCUCGGccGCCCUccGCg -3'
miRNA:   3'- aUUCGCGCGau-GGAGCU--CGGGGcuUG- -5'
23699 3' -57.7 NC_005261.1 + 104282 0.68 0.662216
Target:  5'- -cGGCuGCGCggGCCUCGcAGgCCCGcGCg -3'
miRNA:   3'- auUCG-CGCGa-UGGAGC-UCgGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 105307 0.68 0.662216
Target:  5'- cGAGCGCGggGuCCUCGcacuccGCCCCGGc- -3'
miRNA:   3'- aUUCGCGCgaU-GGAGCu-----CGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 59111 0.68 0.6694
Target:  5'- cAGGCGCGCgcgagcuccccgGCCacCGAcucaggccggcgcGCCCCGGGCg -3'
miRNA:   3'- aUUCGCGCGa-----------UGGa-GCU-------------CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 132717 0.68 0.672475
Target:  5'- -cGGCGCcCUACCUCauugcggcGGCCCCGcACu -3'
miRNA:   3'- auUCGCGcGAUGGAGc-------UCGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 85836 0.68 0.662216
Target:  5'- aGAGCGUGUgguugGCCUCGuagagcGCCUCGcGCa -3'
miRNA:   3'- aUUCGCGCGa----UGGAGCu-----CGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 57399 0.68 0.690851
Target:  5'- gGAGCGCGCccgugauccgcgGCCggcgccgCGAGCCCaGGAUg -3'
miRNA:   3'- aUUCGCGCGa-----------UGGa------GCUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 109528 0.68 0.682701
Target:  5'- --uGCGCGCccGCCgCGGGCCCCc--- -3'
miRNA:   3'- auuCGCGCGa-UGGaGCUCGGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 106723 0.68 0.682701
Target:  5'- gAAGCG-GCccACCUCGugcAGCCCCGGc- -3'
miRNA:   3'- aUUCGCgCGa-UGGAGC---UCGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 44306 0.68 0.682701
Target:  5'- aGGGC-CGCUGCCcgCGGGCgCCGcaGACg -3'
miRNA:   3'- aUUCGcGCGAUGGa-GCUCGgGGC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 118378 0.68 0.682701
Target:  5'- gGGGCGCGCgGCC-CGAggcgcuggcgGCCgCGGGCg -3'
miRNA:   3'- aUUCGCGCGaUGGaGCU----------CGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 86196 0.69 0.641632
Target:  5'- cGAGCGgGCUccGCgUCGGcGCgCCGAACc -3'
miRNA:   3'- aUUCGCgCGA--UGgAGCU-CGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 68180 0.69 0.641632
Target:  5'- --cGCGCGC-GCCgCGGGCCCCc--- -3'
miRNA:   3'- auuCGCGCGaUGGaGCUCGGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 55426 0.69 0.631325
Target:  5'- -cGGCugGCGCcACCgCGAGCCCucCGAGCg -3'
miRNA:   3'- auUCG--CGCGaUGGaGCUCGGG--GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 38523 0.69 0.631325
Target:  5'- --cGCGCGCUGgCUgCGcGCgCCGGGCa -3'
miRNA:   3'- auuCGCGCGAUgGA-GCuCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 92938 0.69 0.631325
Target:  5'- gGAGCa-GCUGCC-CGGcGUCCCGGACa -3'
miRNA:   3'- aUUCGcgCGAUGGaGCU-CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 19764 0.69 0.631325
Target:  5'- cGGGCGCGg-GCCcCGucGCCUCGAACa -3'
miRNA:   3'- aUUCGCGCgaUGGaGCu-CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 4914 0.69 0.631325
Target:  5'- -cGGCG-GCUGCCUCcgccgcGGCCgCGAGCg -3'
miRNA:   3'- auUCGCgCGAUGGAGc-----UCGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 61948 0.69 0.608662
Target:  5'- gGGGCGCGCgccgACCgcgucccccagcCGGGUCgCCGAGCu -3'
miRNA:   3'- aUUCGCGCGa---UGGa-----------GCUCGG-GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 61405 0.69 0.621018
Target:  5'- cGGGCGCGUggugGCCUCGcaggaccuGGCCUCGcuGACc -3'
miRNA:   3'- aUUCGCGCGa---UGGAGC--------UCGGGGC--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.